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The map label for this gene is ygcI [C]

Identifier: 116493920

GI number: 116493920

Start: 353626

End: 354336

Strand: Direct

Name: ygcI [C]

Synonym: LSEI_0353

Alternate gene names: 116493920

Gene position: 353626-354336 (Clockwise)

Preceding gene: 116493919

Following gene: 116493921

Centisome position: 12.21

GC content: 62.73

Gene sequence:

>711_bases
ATGAAAACGATCTCGATCAGGCTAACTAGCCCGCTGCAGTCGTACGGGAATGAGGCCCAGTTTGCGCGGCGGACGACCGG
GGATTACCCCTCAAAAAGTGCGATTATCGGGATGCTTGCGGCGGCGCTGGGCTATCAACGCGACGATCCGGCGATCAATG
CGCTCAACGACCTGCTCTTTGCGGTGCGCGTTGATCAGCCCGGCCAGGTGATGACGGAGTTCCAGACTGCGGAGTGGAAA
CCCGGTACGCGGAAGCTGACGTATCGTGACCTGCTTCAGGATGCCGTGTTTGTCGTGGCCATCGGGAGCGAGGACGAGGC
GTGGCTCGACCGGCTGGCCGAGGCGCTGCGCCATCCGCGGTTTCAGCTGTACCTGGGGCGGCGGGCCAACGTGCCGGCCG
GCGTGTTGAAAATTCAGACCTTCGCCGGGCAGGATCCGGTCGGGGTGCTGGCCCAGCTGCCTTGGCAGGCCTCGCGCTGG
TACCAGCGGCGTTCGCGGCGTCAGGCAAGCATGAGCGTTCAGTTGATCGCGGATGCTGTCCTGTTACCAGAGCGCCGGGC
CGATTTGGTCAGGGATGCTGTGCACTCTTTTGACCAAAAGCACCGGCAATACAGTTTTCGCCCCATCGCCGTGACCAAGG
TGCAGCTGGCCAATCCGGAATACAAGCCAGCGCCCACGGCCACTGCGCAGGATGCCTTCGGTCAAGTATAG

Upstream 100 bases:

>100_bases
GCCGTGGTGGGGAAGACCAACGGTGAAGTCGGCGAGCAACAGGCCAACGTCAACGGGTTGCTTGATGCAGTGGGTGCGGT
TTTGAAGAAGGCGGTCAGCG

Downstream 100 bases:

>100_bases
AGAGGAGGTACGTCAATGTATCTTTCACGAGTCCAAGTGAATACCAATGATCACCAGATTTTCAAGCACCTGACCCACCT
TGGCGCCTATCACGACTGGG

Product: CRISPR-associated protein

Products: NA

Alternate protein names: CRISPR-Associated Family; CRISPR-Associated Cas5e Family Protein; CRISPR-Associated Cas5 Family Protein; Cas5 Family CRISPR-Associated Protein; Crispr-Associated Protein; CRISPR-Associated Protein Cas5e Family; Crispr-Associated Family Protein; CRISPR-Associated Protein Cas5e-Type; CRISPR-Associated Cas5 Family Ecoli Subtype Protein; CRISPR-Associated Cse5e Family Protein; CRISPR-Associated Protein CT; CRISPR-Associated Subtype

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MKTISIRLTSPLQSYGNEAQFARRTTGDYPSKSAIIGMLAAALGYQRDDPAINALNDLLFAVRVDQPGQVMTEFQTAEWK
PGTRKLTYRDLLQDAVFVVAIGSEDEAWLDRLAEALRHPRFQLYLGRRANVPAGVLKIQTFAGQDPVGVLAQLPWQASRW
YQRRSRRQASMSVQLIADAVLLPERRADLVRDAVHSFDQKHRQYSFRPIAVTKVQLANPEYKPAPTATAQDAFGQV

Sequences:

>Translated_236_residues
MKTISIRLTSPLQSYGNEAQFARRTTGDYPSKSAIIGMLAAALGYQRDDPAINALNDLLFAVRVDQPGQVMTEFQTAEWK
PGTRKLTYRDLLQDAVFVVAIGSEDEAWLDRLAEALRHPRFQLYLGRRANVPAGVLKIQTFAGQDPVGVLAQLPWQASRW
YQRRSRRQASMSVQLIADAVLLPERRADLVRDAVHSFDQKHRQYSFRPIAVTKVQLANPEYKPAPTATAQDAFGQV
>Mature_236_residues
MKTISIRLTSPLQSYGNEAQFARRTTGDYPSKSAIIGMLAAALGYQRDDPAINALNDLLFAVRVDQPGQVMTEFQTAEWK
PGTRKLTYRDLLQDAVFVVAIGSEDEAWLDRLAEALRHPRFQLYLGRRANVPAGVLKIQTFAGQDPVGVLAQLPWQASRW
YQRRSRRQASMSVQLIADAVLLPERRADLVRDAVHSFDQKHRQYSFRPIAVTKVQLANPEYKPAPTATAQDAFGQV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26496; Mature: 26496

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTISIRLTSPLQSYGNEAQFARRTTGDYPSKSAIIGMLAAALGYQRDDPAINALNDLLF
CCEEEEEECCHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHE
AVRVDQPGQVMTEFQTAEWKPGTRKLTYRDLLQDAVFVVAIGSEDEAWLDRLAEALRHPR
EEECCCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHCCC
FQLYLGRRANVPAGVLKIQTFAGQDPVGVLAQLPWQASRWYQRRSRRQASMSVQLIADAV
EEEEECCCCCCCCCCEEEEEECCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LLPERRADLVRDAVHSFDQKHRQYSFRPIAVTKVQLANPEYKPAPTATAQDAFGQV
HCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHCCCC
>Mature Secondary Structure
MKTISIRLTSPLQSYGNEAQFARRTTGDYPSKSAIIGMLAAALGYQRDDPAINALNDLLF
CCEEEEEECCHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHE
AVRVDQPGQVMTEFQTAEWKPGTRKLTYRDLLQDAVFVVAIGSEDEAWLDRLAEALRHPR
EEECCCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHCCC
FQLYLGRRANVPAGVLKIQTFAGQDPVGVLAQLPWQASRWYQRRSRRQASMSVQLIADAV
EEEEECCCCCCCCCCEEEEEECCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LLPERRADLVRDAVHSFDQKHRQYSFRPIAVTKVQLANPEYKPAPTATAQDAFGQV
HCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA