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The map label for this gene is 116493917

Identifier: 116493917

GI number: 116493917

Start: 350268

End: 351977

Strand: Direct

Name: 116493917

Synonym: LSEI_0350

Alternate gene names: NA

Gene position: 350268-351977 (Clockwise)

Preceding gene: 116493916

Following gene: 116493918

Centisome position: 12.1

GC content: 54.27

Gene sequence:

>1710_bases
ATGGCAACGAGACAGTTTAATTTGGTCACGGATCCCTGGATCAAGGTGATCCGCGCGGCCGATTACCGAAGTGAGGAGGT
CTCGCTACAAACCCTGTTTCAACAGTCATCAGACTATTTGCGGCTGGCCGGAGAAACGCAATCACAGGACCTCGCGATCA
TGCGGTTATTACTGGCAATTTTACACACGGTGTACTCGCGCTTTGACGCGACGGGCGAACCGTACGAGTGGCTCACGATC
GATCTGGAGTCGCTGCAGGTAGCGGAAGCGGTGGAGCAGGATGACTACGAGCCTGACGATCTGTTCGAGACCTGGGACGC
CTTGCATCAGTTGGGTCATTTTTCCGCCATCGTGATCGAGTATTTGGCGCGGTACCAGGATCGATTTGATTTCTTTGGGG
AGCGGCCGTTCTATCAGGCGACCCAAAGCGAATATGACGTCTTGGTCCCGGAGAAGAAAAAAGTGGCCACTGGTAGCGGA
ACGGTTGCGATCCGGCAGATCAATCGCACCATTTCGGAGAGCGGCAATTCGCCGGCTCTTTTCGCCCCCAGGAGTGATGC
TGGCAAGGATACGCTCGGCATGGCGGAGTTAGTGCGCTGGGTGATCACCTATCAGAACTACACCGGGGTGACGGACAAAA
CCAAAATTGTCGCTCAGGAAAACTTCTCAAATGACTCGGGATGGCTTTATCGACTCAGCCCCGTCTTCGCTGTCGGGGAC
ACGCTCTTTGACACTTTATTGCTAAACCTGATCCTCGTTCAAAACGAGGACGCGCCCTATGCGGTTGAACGTCCCGTTTG
GGAGCGGCCGAATGCGCAACGCTATGTGCAGGATCGAGAACGTCAGCGTCAGCCGGACAATTTGGCCGCTCTGTACACGT
CCTGGTCGCGAGTGCTCTTTCTTCAGTGGGGAGACGATCGCCTAGAGAACATCTTTAGTGCTGGCGTACCACCATTTTCA
GCGGACAACGCTTTTCTAGAGCCAATGACGACGTGGCGCTGGATCAAGAAGGAGCAAGTTTATCGGCCACATCGGAAAGC
GATGACGTCAGTTTCCAAGGCCATGTGGCGTAATTTTGGCGAGTATGTGGATCTTCATGACGATTCTAAGCGGAGGCAGC
CGGGCGTGGTCACTTGGCTGCAGACACTTAAGGCGCGGAAGAGCCTCCCCGGTGAAACCCAGATCACGTTGGCAACTGTC
GCACTGATCAGTGATGGTAATGCAACCTCTCAGGCGCCGGCAGCGGAGGTGGCGGACGTCATGCGAGTCAATGCGGACGT
ACTGTTTGATTCGATGGGGGCCCAGTACTGGCCGAAACGAATCGAGGACGCGATCGAAAGTACGGACACGGTCGCCAAGT
TCTACTGGATCTTTGTCAGCACGATCGCCAAGCTCCGCAACATTTCGGGAAGTACCTTTGCTGCCGCTGAGCAGGAAAAG
TTTTATCAGGACTTGACCATTCCATTTGACAACTGGTTGCGTACATTGTCGATCAATGATGATCGGGATGCGAAAATCGG
GCAGTGGAACGCGCAGGTCAAGAAAATCGTTTTGTCTCGCGCCAAGGGCTTCATGACAAGTGCGACCCCGAGAGACATGG
CCGGATTAACAGACGAGAATGGCAATGAAACCAACATTTTCATTGCCTATCGCCAGTTGCTCGGACGTGTGTCCGAGCAA
CTCGGTGATCGAAAGGGGGAAGTCAAGTGA

Upstream 100 bases:

>100_bases
TTGGCGCTGCCGCTGGATGAAGAGTTGAACGGTTCGCTGATGGATTATCAGCTCCATTACTCATTGAAGGATGGGCTGAG
GTATTGGAAGGAGGACCAAG

Downstream 100 bases:

>100_bases
CAGAATCAATTCAGAGCACCACTGCCCGCATTATTAGACAGCTATACGGAAACTCGGAACCGAATAAGGCCGTTCTTGCG
GGGCTCAGAGGAGCCAGTCG

Product: CRISPR-associated protein

Products: NA

Alternate protein names: CRISPR-Associated Protein Cse1 Family; CRISPR-Associated Cse1 Family Protein; Cse1 Family CRISPR-Associated Protein; CRISPR System CASCADE Complex Protein CasA; Crispr-Associated Protein; CRISPR-Associated Helicase; CRISPR-Associated Helicase Cas3 Family Protein Protein

Number of amino acids: Translated: 569; Mature: 568

Protein sequence:

>569_residues
MATRQFNLVTDPWIKVIRAADYRSEEVSLQTLFQQSSDYLRLAGETQSQDLAIMRLLLAILHTVYSRFDATGEPYEWLTI
DLESLQVAEAVEQDDYEPDDLFETWDALHQLGHFSAIVIEYLARYQDRFDFFGERPFYQATQSEYDVLVPEKKKVATGSG
TVAIRQINRTISESGNSPALFAPRSDAGKDTLGMAELVRWVITYQNYTGVTDKTKIVAQENFSNDSGWLYRLSPVFAVGD
TLFDTLLLNLILVQNEDAPYAVERPVWERPNAQRYVQDRERQRQPDNLAALYTSWSRVLFLQWGDDRLENIFSAGVPPFS
ADNAFLEPMTTWRWIKKEQVYRPHRKAMTSVSKAMWRNFGEYVDLHDDSKRRQPGVVTWLQTLKARKSLPGETQITLATV
ALISDGNATSQAPAAEVADVMRVNADVLFDSMGAQYWPKRIEDAIESTDTVAKFYWIFVSTIAKLRNISGSTFAAAEQEK
FYQDLTIPFDNWLRTLSINDDRDAKIGQWNAQVKKIVLSRAKGFMTSATPRDMAGLTDENGNETNIFIAYRQLLGRVSEQ
LGDRKGEVK

Sequences:

>Translated_569_residues
MATRQFNLVTDPWIKVIRAADYRSEEVSLQTLFQQSSDYLRLAGETQSQDLAIMRLLLAILHTVYSRFDATGEPYEWLTI
DLESLQVAEAVEQDDYEPDDLFETWDALHQLGHFSAIVIEYLARYQDRFDFFGERPFYQATQSEYDVLVPEKKKVATGSG
TVAIRQINRTISESGNSPALFAPRSDAGKDTLGMAELVRWVITYQNYTGVTDKTKIVAQENFSNDSGWLYRLSPVFAVGD
TLFDTLLLNLILVQNEDAPYAVERPVWERPNAQRYVQDRERQRQPDNLAALYTSWSRVLFLQWGDDRLENIFSAGVPPFS
ADNAFLEPMTTWRWIKKEQVYRPHRKAMTSVSKAMWRNFGEYVDLHDDSKRRQPGVVTWLQTLKARKSLPGETQITLATV
ALISDGNATSQAPAAEVADVMRVNADVLFDSMGAQYWPKRIEDAIESTDTVAKFYWIFVSTIAKLRNISGSTFAAAEQEK
FYQDLTIPFDNWLRTLSINDDRDAKIGQWNAQVKKIVLSRAKGFMTSATPRDMAGLTDENGNETNIFIAYRQLLGRVSEQ
LGDRKGEVK
>Mature_568_residues
ATRQFNLVTDPWIKVIRAADYRSEEVSLQTLFQQSSDYLRLAGETQSQDLAIMRLLLAILHTVYSRFDATGEPYEWLTID
LESLQVAEAVEQDDYEPDDLFETWDALHQLGHFSAIVIEYLARYQDRFDFFGERPFYQATQSEYDVLVPEKKKVATGSGT
VAIRQINRTISESGNSPALFAPRSDAGKDTLGMAELVRWVITYQNYTGVTDKTKIVAQENFSNDSGWLYRLSPVFAVGDT
LFDTLLLNLILVQNEDAPYAVERPVWERPNAQRYVQDRERQRQPDNLAALYTSWSRVLFLQWGDDRLENIFSAGVPPFSA
DNAFLEPMTTWRWIKKEQVYRPHRKAMTSVSKAMWRNFGEYVDLHDDSKRRQPGVVTWLQTLKARKSLPGETQITLATVA
LISDGNATSQAPAAEVADVMRVNADVLFDSMGAQYWPKRIEDAIESTDTVAKFYWIFVSTIAKLRNISGSTFAAAEQEKF
YQDLTIPFDNWLRTLSINDDRDAKIGQWNAQVKKIVLSRAKGFMTSATPRDMAGLTDENGNETNIFIAYRQLLGRVSEQL
GDRKGEVK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 64951; Mature: 64819

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATRQFNLVTDPWIKVIRAADYRSEEVSLQTLFQQSSDYLRLAGETQSQDLAIMRLLLAI
CCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHH
LHTVYSRFDATGEPYEWLTIDLESLQVAEAVEQDDYEPDDLFETWDALHQLGHFSAIVIE
HHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
YLARYQDRFDFFGERPFYQATQSEYDVLVPEKKKVATGSGTVAIRQINRTISESGNSPAL
HHHHHHHHHHHCCCCCCHHHCCCCCEEECCCCCEEECCCCCEEHHHHHHHHHHCCCCCEE
FAPRSDAGKDTLGMAELVRWVITYQNYTGVTDKTKIVAQENFSNDSGWLYRLSPVFAVGD
ECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEECHHHHHHH
TLFDTLLLNLILVQNEDAPYAVERPVWERPNAQRYVQDRERQRQPDNLAALYTSWSRVLF
HHHHHHHHHHHEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCEEEE
LQWGDDRLENIFSAGVPPFSADNAFLEPMTTWRWIKKEQVYRPHRKAMTSVSKAMWRNFG
EEECHHHHHHHHHCCCCCCCCCCCHHCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
EYVDLHDDSKRRQPGVVTWLQTLKARKSLPGETQITLATVALISDGNATSQAPAAEVADV
CEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCCCHHHHHHH
MRVNADVLFDSMGAQYWPKRIEDAIESTDTVAKFYWIFVSTIAKLRNISGSTFAAAEQEK
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
FYQDLTIPFDNWLRTLSINDDRDAKIGQWNAQVKKIVLSRAKGFMTSATPRDMAGLTDEN
HHHHCCCCHHHHEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCC
GNETNIFIAYRQLLGRVSEQLGDRKGEVK
CCCCEEEHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
ATRQFNLVTDPWIKVIRAADYRSEEVSLQTLFQQSSDYLRLAGETQSQDLAIMRLLLAI
CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHH
LHTVYSRFDATGEPYEWLTIDLESLQVAEAVEQDDYEPDDLFETWDALHQLGHFSAIVIE
HHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
YLARYQDRFDFFGERPFYQATQSEYDVLVPEKKKVATGSGTVAIRQINRTISESGNSPAL
HHHHHHHHHHHCCCCCCHHHCCCCCEEECCCCCEEECCCCCEEHHHHHHHHHHCCCCCEE
FAPRSDAGKDTLGMAELVRWVITYQNYTGVTDKTKIVAQENFSNDSGWLYRLSPVFAVGD
ECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEECHHHHHHH
TLFDTLLLNLILVQNEDAPYAVERPVWERPNAQRYVQDRERQRQPDNLAALYTSWSRVLF
HHHHHHHHHHHEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCEEEE
LQWGDDRLENIFSAGVPPFSADNAFLEPMTTWRWIKKEQVYRPHRKAMTSVSKAMWRNFG
EEECHHHHHHHHHCCCCCCCCCCCHHCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
EYVDLHDDSKRRQPGVVTWLQTLKARKSLPGETQITLATVALISDGNATSQAPAAEVADV
CEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCCCHHHHHHH
MRVNADVLFDSMGAQYWPKRIEDAIESTDTVAKFYWIFVSTIAKLRNISGSTFAAAEQEK
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
FYQDLTIPFDNWLRTLSINDDRDAKIGQWNAQVKKIVLSRAKGFMTSATPRDMAGLTDEN
HHHHCCCCHHHHEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCC
GNETNIFIAYRQLLGRVSEQLGDRKGEVK
CCCCEEEHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA