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The map label for this gene is ygcB [H]

Identifier: 116493916

GI number: 116493916

Start: 347519

End: 350287

Strand: Direct

Name: ygcB [H]

Synonym: LSEI_0349

Alternate gene names: 116493916

Gene position: 347519-350287 (Clockwise)

Preceding gene: 116493914

Following gene: 116493917

Centisome position: 12.0

GC content: 57.02

Gene sequence:

>2769_bases
ATGTTGAGTGAAAGGGCTAAGAGCCTGTGGGCGAAGAAGCGAACGGTTGATGGCCAGCCAAAGTGGTTACCGCTTGTGGC
GCATTTGGTCGATGCTTCTAATGTTTCCCGGATGCTGTTTAACCAGTGGCTAAGCGACCAGCAACGTGTTTTTTTGACAG
TGGACCAAGACGTAGACAAAACACTTAAACTGGTCAAGTTTGTAGGATTCATCCATGACATTGGAAAAGCCACTCCCGCC
TTCCAAACGAAAAAATCATATGTTGAAGATGCCATTCTTGATGCCGATTTGATTGAAAAGGCGGTCAGGACTGGTTTTGT
TGGCTTGGATTCAACTCATCTGCCGTCGGCGTCAAAGTCCCCACATGCCAAGGCCGGCGAGGCGATTCTTGAGCGGCTCG
CCGGCCCGGATTCCATCGGTGCAATTGTTGGCGGTCATCATGGTCGGCCGCTAACCAGGGCGCCACAACGTGATATTGGT
GACTACACATCGAATTATTGGCAGGCCGAAAAGGATCCGGTTGTTCAGCAACGGTGGCAAGACGTCCAGCTTGAGCTCCT
CAATTACGGTCTTGAAATCTCCGGTTTCAAGTCGGTGGCGGAGTTGCCAATGATCAGTCAGCCCCAGGCGGTGCTGCTTG
AAGGCTTACTGATCATGGCGGACTGGTTGTCTTCAAGCGAGGCGCTTGAAGATGATCCTGGCCAGCCGCTTTTCCCATTG
ATCTCACTTGATCAGGGCCTGGACGACTTGAATTTGACGGCACGGTATCAGCAGGCCTGGACCCGGTGGCAACGGACCGA
CGAGTGGCCCACTGCGCCTGTGCCGCTAGCGTCCGACCCTTACAAGCTTCGCTGGGGCTTCTCGGCGCGGCCTGTTCAGC
GAAAAGTGGCCGAGATGATCGATCAGGCCGAAGATCCGGGGATGGTCATCATTGAGGCGCCAATGGGCATGGGGAAAACC
GAGGCAGCCTTAGTGGCGGCTGAGCAACTGGCGTACAAGGGCAAGGAGACGGGACTGTTTTTTGGCCTGCCGACGCAGGC
GACCGCGAATGCCATGTTTGATCGCGTTGATGAGTGGCTGAGGCGATTGGCTGCCGACAACGGTGAAACTTATTCAATCA
AGCTCATGCACAGCAAGGCGGAATTCAATCCGAATTACCTCAAGGTCCCCGTTGCGGAAGACGTTGATGGTGACGCCTCG
GTGGTGGTCAACCGGTGGTTCTCGGGCAAAAAGTCGATCCTCGACGAGTTCAGCATCGGGACGATCGACAATCTGCTGCA
AATGGATCTTAAACAAAAGCACCTTGCGCTGAAGCACCTCGGCCTGAGTAAAAAGGTCGTCATCATTGACGAGGTTCACG
CGTACGATTCGTTCATGGACCAGCACTTGTTCCGCACGCTTGAATGGCTGGGCACCTACCACGTGCCGATCGTCGTGTTA
TCGGCGACCCTGCCGAAAGCAACACGCAATCGCCTGCTCGAGGCCTATTTTCACGGAAAGTTCGGTCAGAAACTAAGCAA
GGGGGCAGACCTGAGCAGGGTCTCTTCGGATTGGCAGGACAGCGAGGCCTATCCGCTGGTGTCGATGCTCGACGGGCGGC
GACTCAATCAGGTCAGCCATTTTGACGGTAAAACCAATCAGAGCCAGCTTTCCATTCATGTTGAGCGCATGAGCGGTGAC
TTGACTGCGCTAGGCGAGCGTGTGCTTGACGCGATCGCGGATGGCGGAGTTGCCGGGGTGATTGTCAACACGATCAAGCG
GGCCCAAGCGCTGGCCGATGCGTTGGCGGGGAAGGTCCCTTTTATCGTGCTTCACTCCGCCTTTGTCGCCGCTCAACGGG
CCCAGTTGGAGACTGAGCTGCAAAATGCGATCGGCAAGGGGAGCAAGCGCCCCGCCAAGCTGGTCGTGATCGGCACGCAG
GTGCTCGAGCAGTCCCTGGATATCGATTTTGACATTCTGTTCACCGACATTGCGCCGATGGATCTGTTGCTGCAGCGGGC
CGGGCGGCTCCATCGCCATGCCATTGCGCGGCCGCGCGCGCTGACTGGGCCCCGGCTGGTGGTGACGGGCATTGAGGGGC
TGGGCGAGTTCGAGGAAGGCAGTGCTGCCATCTACGGCCAGTACCTGCTGATGAAAACCGAGGCGCTGCTGCCGGCCACG
CTGCGGCTGCCCGATGACATCTCCCGGCTGGTTCAAACCACGTATGATTTGCAGCGTGACCCACCATTGCCGGGGATCGA
GGAGGAAAGGACTCGCTTCGAGACCAAAATTGCGCAAAAGGCGCAGAAGGCTCAGGCGTTTCAAATTGCCCCGCCAAGTA
GAAGGCGGAGCCGGACCCTTCATGGCTGGCTGGACAATGATCAGCCCGGCGTGGACGTCAGCGAGCAACGCGCGGAAGCT
GCGGTGCGGGATATTGATGAGTCGCTTGAGGTCATTTTGCTGCAGCACACAAAGCACGGGGATGCGCTGATCGACGGTCG
TGTCGTCGACTCGTTCCAGCTTGACCGAATGGCCAAGGTGATCGCGCAGCAGACAATCCGCTTGCCGCGGGTGTTTACCT
TTAATATCGACGCCACGATCAAGGCCCTGGAGCAGGAAACGGCGCGCCTCTATCCGGGCTGGCAGCAGAATAAATGGCTC
CGCGGGGCCTTGGCGCTGCCGCTGGATGAAGAGTTGAACGGTTCGCTGATGGATTATCAGCTCCATTACTCATTGAAGGA
TGGGCTGAGGTATTGGAAGGAGGACCAAGATGGCAACGAGACAGTTTAA

Upstream 100 bases:

>100_bases
GAGAAACTGATTCCATTATTAATGTTGTGAATCTTGAAGCCAACTTATACGCTCATTGATGATTGGAATTGTCGCTGTTC
TGTCTTTAGGGGGAATCGCC

Downstream 100 bases:

>100_bases
TTTGGTCACGGATCCCTGGATCAAGGTGATCCGCGCGGCCGATTACCGAAGTGAGGAGGTCTCGCTACAAACCCTGTTTC
AACAGTCATCAGACTATTTG

Product: CRISPR-associated helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 922; Mature: 922

Protein sequence:

>922_residues
MLSERAKSLWAKKRTVDGQPKWLPLVAHLVDASNVSRMLFNQWLSDQQRVFLTVDQDVDKTLKLVKFVGFIHDIGKATPA
FQTKKSYVEDAILDADLIEKAVRTGFVGLDSTHLPSASKSPHAKAGEAILERLAGPDSIGAIVGGHHGRPLTRAPQRDIG
DYTSNYWQAEKDPVVQQRWQDVQLELLNYGLEISGFKSVAELPMISQPQAVLLEGLLIMADWLSSSEALEDDPGQPLFPL
ISLDQGLDDLNLTARYQQAWTRWQRTDEWPTAPVPLASDPYKLRWGFSARPVQRKVAEMIDQAEDPGMVIIEAPMGMGKT
EAALVAAEQLAYKGKETGLFFGLPTQATANAMFDRVDEWLRRLAADNGETYSIKLMHSKAEFNPNYLKVPVAEDVDGDAS
VVVNRWFSGKKSILDEFSIGTIDNLLQMDLKQKHLALKHLGLSKKVVIIDEVHAYDSFMDQHLFRTLEWLGTYHVPIVVL
SATLPKATRNRLLEAYFHGKFGQKLSKGADLSRVSSDWQDSEAYPLVSMLDGRRLNQVSHFDGKTNQSQLSIHVERMSGD
LTALGERVLDAIADGGVAGVIVNTIKRAQALADALAGKVPFIVLHSAFVAAQRAQLETELQNAIGKGSKRPAKLVVIGTQ
VLEQSLDIDFDILFTDIAPMDLLLQRAGRLHRHAIARPRALTGPRLVVTGIEGLGEFEEGSAAIYGQYLLMKTEALLPAT
LRLPDDISRLVQTTYDLQRDPPLPGIEEERTRFETKIAQKAQKAQAFQIAPPSRRRSRTLHGWLDNDQPGVDVSEQRAEA
AVRDIDESLEVILLQHTKHGDALIDGRVVDSFQLDRMAKVIAQQTIRLPRVFTFNIDATIKALEQETARLYPGWQQNKWL
RGALALPLDEELNGSLMDYQLHYSLKDGLRYWKEDQDGNETV

Sequences:

>Translated_922_residues
MLSERAKSLWAKKRTVDGQPKWLPLVAHLVDASNVSRMLFNQWLSDQQRVFLTVDQDVDKTLKLVKFVGFIHDIGKATPA
FQTKKSYVEDAILDADLIEKAVRTGFVGLDSTHLPSASKSPHAKAGEAILERLAGPDSIGAIVGGHHGRPLTRAPQRDIG
DYTSNYWQAEKDPVVQQRWQDVQLELLNYGLEISGFKSVAELPMISQPQAVLLEGLLIMADWLSSSEALEDDPGQPLFPL
ISLDQGLDDLNLTARYQQAWTRWQRTDEWPTAPVPLASDPYKLRWGFSARPVQRKVAEMIDQAEDPGMVIIEAPMGMGKT
EAALVAAEQLAYKGKETGLFFGLPTQATANAMFDRVDEWLRRLAADNGETYSIKLMHSKAEFNPNYLKVPVAEDVDGDAS
VVVNRWFSGKKSILDEFSIGTIDNLLQMDLKQKHLALKHLGLSKKVVIIDEVHAYDSFMDQHLFRTLEWLGTYHVPIVVL
SATLPKATRNRLLEAYFHGKFGQKLSKGADLSRVSSDWQDSEAYPLVSMLDGRRLNQVSHFDGKTNQSQLSIHVERMSGD
LTALGERVLDAIADGGVAGVIVNTIKRAQALADALAGKVPFIVLHSAFVAAQRAQLETELQNAIGKGSKRPAKLVVIGTQ
VLEQSLDIDFDILFTDIAPMDLLLQRAGRLHRHAIARPRALTGPRLVVTGIEGLGEFEEGSAAIYGQYLLMKTEALLPAT
LRLPDDISRLVQTTYDLQRDPPLPGIEEERTRFETKIAQKAQKAQAFQIAPPSRRRSRTLHGWLDNDQPGVDVSEQRAEA
AVRDIDESLEVILLQHTKHGDALIDGRVVDSFQLDRMAKVIAQQTIRLPRVFTFNIDATIKALEQETARLYPGWQQNKWL
RGALALPLDEELNGSLMDYQLHYSLKDGLRYWKEDQDGNETV
>Mature_922_residues
MLSERAKSLWAKKRTVDGQPKWLPLVAHLVDASNVSRMLFNQWLSDQQRVFLTVDQDVDKTLKLVKFVGFIHDIGKATPA
FQTKKSYVEDAILDADLIEKAVRTGFVGLDSTHLPSASKSPHAKAGEAILERLAGPDSIGAIVGGHHGRPLTRAPQRDIG
DYTSNYWQAEKDPVVQQRWQDVQLELLNYGLEISGFKSVAELPMISQPQAVLLEGLLIMADWLSSSEALEDDPGQPLFPL
ISLDQGLDDLNLTARYQQAWTRWQRTDEWPTAPVPLASDPYKLRWGFSARPVQRKVAEMIDQAEDPGMVIIEAPMGMGKT
EAALVAAEQLAYKGKETGLFFGLPTQATANAMFDRVDEWLRRLAADNGETYSIKLMHSKAEFNPNYLKVPVAEDVDGDAS
VVVNRWFSGKKSILDEFSIGTIDNLLQMDLKQKHLALKHLGLSKKVVIIDEVHAYDSFMDQHLFRTLEWLGTYHVPIVVL
SATLPKATRNRLLEAYFHGKFGQKLSKGADLSRVSSDWQDSEAYPLVSMLDGRRLNQVSHFDGKTNQSQLSIHVERMSGD
LTALGERVLDAIADGGVAGVIVNTIKRAQALADALAGKVPFIVLHSAFVAAQRAQLETELQNAIGKGSKRPAKLVVIGTQ
VLEQSLDIDFDILFTDIAPMDLLLQRAGRLHRHAIARPRALTGPRLVVTGIEGLGEFEEGSAAIYGQYLLMKTEALLPAT
LRLPDDISRLVQTTYDLQRDPPLPGIEEERTRFETKIAQKAQKAQAFQIAPPSRRRSRTLHGWLDNDQPGVDVSEQRAEA
AVRDIDESLEVILLQHTKHGDALIDGRVVDSFQLDRMAKVIAQQTIRLPRVFTFNIDATIKALEQETARLYPGWQQNKWL
RGALALPLDEELNGSLMDYQLHYSLKDGLRYWKEDQDGNETV

Specific function: Unknown

COG id: COG1203

COG function: function code R; Predicted helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI1789119, Length=571, Percent_Identity=29.7723292469352, Blast_Score=200, Evalue=3e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006483
- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR006474
- InterPro:   IPR014021 [H]

Pfam domain/function: PF00270 DEAD [H]

EC number: NA

Molecular weight: Translated: 102869; Mature: 102869

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSERAKSLWAKKRTVDGQPKWLPLVAHLVDASNVSRMLFNQWLSDQQRVFLTVDQDVDK
CCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHH
TLKLVKFVGFIHDIGKATPAFQTKKSYVEDAILDADLIEKAVRTGFVGLDSTHLPSASKS
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PHAKAGEAILERLAGPDSIGAIVGGHHGRPLTRAPQRDIGDYTSNYWQAEKDPVVQQRWQ
CCCHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHH
DVQLELLNYGLEISGFKSVAELPMISQPQAVLLEGLLIMADWLSSSEALEDDPGQPLFPL
HHHHHHHHCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
ISLDQGLDDLNLTARYQQAWTRWQRTDEWPTAPVPLASDPYKLRWGFSARPVQRKVAEMI
HHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHH
DQAEDPGMVIIEAPMGMGKTEAALVAAEQLAYKGKETGLFFGLPTQATANAMFDRVDEWL
HCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHH
RRLAADNGETYSIKLMHSKAEFNPNYLKVPVAEDVDGDASVVVNRWFSGKKSILDEFSIG
HHHHCCCCCEEEEEEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCHHHHHHHCCCC
TIDNLLQMDLKQKHLALKHLGLSKKVVIIDEVHAYDSFMDQHLFRTLEWLGTYHVPIVVL
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
SATLPKATRNRLLEAYFHGKFGQKLSKGADLSRVSSDWQDSEAYPLVSMLDGRRLNQVSH
ECCCCHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHCCCCCCCCCCHHHHHCCCHHHHHHH
FDGKTNQSQLSIHVERMSGDLTALGERVLDAIADGGVAGVIVNTIKRAQALADALAGKVP
CCCCCCCCEEEEEEEHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
FIVLHSAFVAAQRAQLETELQNAIGKGSKRPAKLVVIGTQVLEQSLDIDFDILFTDIAPM
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHCCCCEEEEEECCCHH
DLLLQRAGRLHRHAIARPRALTGPRLVVTGIEGLGEFEEGSAAIYGQYLLMKTEALLPAT
HHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCEEEHHHHHHHHHHHHCCCC
LRLPDDISRLVQTTYDLQRDPPLPGIEEERTRFETKIAQKAQKAQAFQIAPPSRRRSRTL
CCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCHHHCCCE
HGWLDNDQPGVDVSEQRAEAAVRDIDESLEVILLQHTKHGDALIDGRVVDSFQLDRMAKV
ECCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCEEECCEECCHHHHHHHHHH
IAQQTIRLPRVFTFNIDATIKALEQETARLYPGWQQNKWLRGALALPLDEELNGSLMDYQ
HHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCEEEEE
LHYSLKDGLRYWKEDQDGNETV
EEEEHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLSERAKSLWAKKRTVDGQPKWLPLVAHLVDASNVSRMLFNQWLSDQQRVFLTVDQDVDK
CCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHH
TLKLVKFVGFIHDIGKATPAFQTKKSYVEDAILDADLIEKAVRTGFVGLDSTHLPSASKS
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PHAKAGEAILERLAGPDSIGAIVGGHHGRPLTRAPQRDIGDYTSNYWQAEKDPVVQQRWQ
CCCHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHH
DVQLELLNYGLEISGFKSVAELPMISQPQAVLLEGLLIMADWLSSSEALEDDPGQPLFPL
HHHHHHHHCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
ISLDQGLDDLNLTARYQQAWTRWQRTDEWPTAPVPLASDPYKLRWGFSARPVQRKVAEMI
HHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHH
DQAEDPGMVIIEAPMGMGKTEAALVAAEQLAYKGKETGLFFGLPTQATANAMFDRVDEWL
HCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHH
RRLAADNGETYSIKLMHSKAEFNPNYLKVPVAEDVDGDASVVVNRWFSGKKSILDEFSIG
HHHHCCCCCEEEEEEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCHHHHHHHCCCC
TIDNLLQMDLKQKHLALKHLGLSKKVVIIDEVHAYDSFMDQHLFRTLEWLGTYHVPIVVL
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
SATLPKATRNRLLEAYFHGKFGQKLSKGADLSRVSSDWQDSEAYPLVSMLDGRRLNQVSH
ECCCCHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHCCCCCCCCCCHHHHHCCCHHHHHHH
FDGKTNQSQLSIHVERMSGDLTALGERVLDAIADGGVAGVIVNTIKRAQALADALAGKVP
CCCCCCCCEEEEEEEHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
FIVLHSAFVAAQRAQLETELQNAIGKGSKRPAKLVVIGTQVLEQSLDIDFDILFTDIAPM
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHCCCCEEEEEECCCHH
DLLLQRAGRLHRHAIARPRALTGPRLVVTGIEGLGEFEEGSAAIYGQYLLMKTEALLPAT
HHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCEEEHHHHHHHHHHHHCCCC
LRLPDDISRLVQTTYDLQRDPPLPGIEEERTRFETKIAQKAQKAQAFQIAPPSRRRSRTL
CCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCHHHCCCE
HGWLDNDQPGVDVSEQRAEAAVRDIDESLEVILLQHTKHGDALIDGRVVDSFQLDRMAKV
ECCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCEEECCEECCHHHHHHHHHH
IAQQTIRLPRVFTFNIDATIKALEQETARLYPGWQQNKWLRGALALPLDEELNGSLMDYQ
HHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCEEEEE
LHYSLKDGLRYWKEDQDGNETV
EEEEHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 2005873; 7984428 [H]