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The map label for this gene is ocd2 [H]

Identifier: 116493900

GI number: 116493900

Start: 332465

End: 333460

Strand: Direct

Name: ocd2 [H]

Synonym: LSEI_0332

Alternate gene names: 116493900

Gene position: 332465-333460 (Clockwise)

Preceding gene: 116493899

Following gene: 116493901

Centisome position: 11.48

GC content: 44.08

Gene sequence:

>996_bases
ATGCGCGTTTTAACGAAAAAAGATGTTCAAGCAGTTTACTCAATGAAAGATGCAATCGCTGATGATAAGATTGCACTGGC
AGCATATTCAAAGGGTGATGCCACCGTTCCATTGAGAACGAATATTGATATCAAACCTGATAATGGGCAAAGTCTTTACA
TGCCTGGTTATGCAGCCGGTAAAGAACCAGCATTAGGTGTGAAGATCGTATCCGTTTACCCTAATAACATTGATAAGGGT
CTTCCTAGCGTTCCCGCAACAATGGTTAGTCTGAACCCAAAGACTGGTATTGTGTCAGCAATTATTGACGGTACTTATCT
TACTCAGCTTCGAACAGGTGCGCTTCAAGGTGCAGCCACTGATTTGATGGCTAACCCTGATGCAAAAGTGGCAACGCTCA
TCGGTACTGGCGGTCAGGCACCAACACAACTAGAGGCCATGCTAAACGTTCGTCAATTGACGCGTGTTTACGTTTCAGAT
ATTGATAAAGATCGTGCTGCAAAGTTTGCACAGGACATGACAAGACGCTTTGGTAAGCAATTTAAGGTTGAAATTCTCCC
AGCAGTTGACTTACAAAAGGCTATTCGAGCATCTGATATTATCACATCGGTCACAACATCAAAACAGGCGACTTTTGATG
CTGCCGATGTTAAACCGGGAGCACATATCAACGGTATCGGCGCATACACTCCGCAAATGCATGAGATCCCCGCAGAACTA
GTTAAACAGGCAGATATTGTTATCTTTGATACGATGGATGGCGTATTAGCCGAAGCGGGAGATATGATCAGTCCACTGAA
GAATGGGCTGGTTTCAAAAGATCAGTATTCAGGTGAGTTAGGACAACTTATTAATGGCGATATTAAAGGCCGAGATAGCC
ATGACCAAATCACATTGTTCAAGGCCGTTGGCACCGCCGTTTTAGATGTCGTTGTTGCTGAAAAAATTTTACAAGCGGCG
GCGAAAGCAGACAAAGGGACTACGATTGATCTGTAG

Upstream 100 bases:

>100_bases
TGTGCTACTTTATTCCGCAATCAGCATGGCATTGTCCTTGCGTCAAAAGGGAGAAGCATAGCATTGCTGTTTCAGGTTCA
ACAATTATAGGAGGATTATG

Downstream 100 bases:

>100_bases
TAGCTTGAAGGATTAAATGTTGGTCGGCATTATTTAAAACTGCAAAGCTGAATAGAGACTACGTAAAAGGCGTCTTGATT
GAGAGTGAAAATTCTTAATC

Product: ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD 2 [H]

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MRVLTKKDVQAVYSMKDAIADDKIALAAYSKGDATVPLRTNIDIKPDNGQSLYMPGYAAGKEPALGVKIVSVYPNNIDKG
LPSVPATMVSLNPKTGIVSAIIDGTYLTQLRTGALQGAATDLMANPDAKVATLIGTGGQAPTQLEAMLNVRQLTRVYVSD
IDKDRAAKFAQDMTRRFGKQFKVEILPAVDLQKAIRASDIITSVTTSKQATFDAADVKPGAHINGIGAYTPQMHEIPAEL
VKQADIVIFDTMDGVLAEAGDMISPLKNGLVSKDQYSGELGQLINGDIKGRDSHDQITLFKAVGTAVLDVVVAEKILQAA
AKADKGTTIDL

Sequences:

>Translated_331_residues
MRVLTKKDVQAVYSMKDAIADDKIALAAYSKGDATVPLRTNIDIKPDNGQSLYMPGYAAGKEPALGVKIVSVYPNNIDKG
LPSVPATMVSLNPKTGIVSAIIDGTYLTQLRTGALQGAATDLMANPDAKVATLIGTGGQAPTQLEAMLNVRQLTRVYVSD
IDKDRAAKFAQDMTRRFGKQFKVEILPAVDLQKAIRASDIITSVTTSKQATFDAADVKPGAHINGIGAYTPQMHEIPAEL
VKQADIVIFDTMDGVLAEAGDMISPLKNGLVSKDQYSGELGQLINGDIKGRDSHDQITLFKAVGTAVLDVVVAEKILQAA
AKADKGTTIDL
>Mature_331_residues
MRVLTKKDVQAVYSMKDAIADDKIALAAYSKGDATVPLRTNIDIKPDNGQSLYMPGYAAGKEPALGVKIVSVYPNNIDKG
LPSVPATMVSLNPKTGIVSAIIDGTYLTQLRTGALQGAATDLMANPDAKVATLIGTGGQAPTQLEAMLNVRQLTRVYVSD
IDKDRAAKFAQDMTRRFGKQFKVEILPAVDLQKAIRASDIITSVTTSKQATFDAADVKPGAHINGIGAYTPQMHEIPAEL
VKQADIVIFDTMDGVLAEAGDMISPLKNGLVSKDQYSGELGQLINGDIKGRDSHDQITLFKAVGTAVLDVVVAEKILQAA
AKADKGTTIDL

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI4503065, Length=299, Percent_Identity=32.1070234113712, Blast_Score=132, Evalue=5e-31,
Organism=Homo sapiens, GI62241008, Length=282, Percent_Identity=32.2695035460993, Blast_Score=130, Evalue=2e-30,
Organism=Drosophila melanogaster, GI24642678, Length=279, Percent_Identity=25.089605734767, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 35125; Mature: 35125

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLTKKDVQAVYSMKDAIADDKIALAAYSKGDATVPLRTNIDIKPDNGQSLYMPGYAAG
CCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEECCEECCCCCCEEEECCCCCC
KEPALGVKIVSVYPNNIDKGLPSVPATMVSLNPKTGIVSAIIDGTYLTQLRTGALQGAAT
CCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCHHHHHHCCHHHHHHHHHHHCCHHH
DLMANPDAKVATLIGTGGQAPTQLEAMLNVRQLTRVYVSDIDKDRAAKFAQDMTRRFGKQ
HHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCE
FKVEILPAVDLQKAIRASDIITSVTTSKQATFDAADVKPGAHINGIGAYTPQMHEIPAEL
EEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
VKQADIVIFDTMDGVLAEAGDMISPLKNGLVSKDQYSGELGQLINGDIKGRDSHDQITLF
HCCCCEEEEECCCHHHHHCCHHHHHHHHCCCCCHHCCCHHHHHHCCCCCCCCCCCCEEHH
KAVGTAVLDVVVAEKILQAAAKADKGTTIDL
HHHHHHHHHHHHHHHHHHHHHHCCCCCEECC
>Mature Secondary Structure
MRVLTKKDVQAVYSMKDAIADDKIALAAYSKGDATVPLRTNIDIKPDNGQSLYMPGYAAG
CCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEECCEECCCCCCEEEECCCCCC
KEPALGVKIVSVYPNNIDKGLPSVPATMVSLNPKTGIVSAIIDGTYLTQLRTGALQGAAT
CCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCHHHHHHCCHHHHHHHHHHHCCHHH
DLMANPDAKVATLIGTGGQAPTQLEAMLNVRQLTRVYVSDIDKDRAAKFAQDMTRRFGKQ
HHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCE
FKVEILPAVDLQKAIRASDIITSVTTSKQATFDAADVKPGAHINGIGAYTPQMHEIPAEL
EEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
VKQADIVIFDTMDGVLAEAGDMISPLKNGLVSKDQYSGELGQLINGDIKGRDSHDQITLF
HCCCCEEEEECCCHHHHHCCHHHHHHHHCCCCCHHCCCHHHHHHCCCCCCCCCCCCEEHH
KAVGTAVLDVVVAEKILQAAAKADKGTTIDL
HHHHHHHHHHHHHHHHHHHHHHCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]