| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
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The map label for this gene is 116493899
Identifier: 116493899
GI number: 116493899
Start: 331556
End: 332425
Strand: Direct
Name: 116493899
Synonym: LSEI_0331
Alternate gene names: NA
Gene position: 331556-332425 (Clockwise)
Preceding gene: 116493898
Following gene: 116493900
Centisome position: 11.45
GC content: 41.61
Gene sequence:
>870_bases ATGATTAAGATCTTATTGGGATTAATCGTACTAATTAATTTAGGCTTTGTATTTTACTTTATCCGTGACTTGCTCCGGCA TCGTTCAGATGTTATGTCGGAACCTGCAACGACATGGGCATTGCCATTTAGCTCATTTATTATCTTCTTACTTTCAACTT TTGGCATTTCTGATTTTGCTATCAGCACGGCACTTTACCCTAAGGCTAAATGGGTTTCAATTAAGAAACTGCCAGGCACC TTAAACACGCAATGTGTTGTCCCCGTTGCTGCAATGGCACTTTCTTACATCACCGCCATTACTGTCGATATTAAAACGCT AGCCGTATGTATCATCGCGGCAGTCATTGGTGCTTACATCGGACCTAGGTTTGTTGTTAAACTGCCAGCTAACACAATTA AGAAGTTTGTGACAGCAGGTCTGATTATTGCCGCGTTAATGATTTTAGCGGGTAAGTTCAATTGGATTCCTGCTAACGGA ACAGCAACGAGCTTATCTGGCTGGAAATTAATGCTAACTGCAATCCTGCTGTTCATTTATGGTGCTCTTAACAACATCGG TATTGGTTCCTATGCTTTGACGATGGCCACGGTTTATGCGATGGGGCTCAATCCATCAGCTGCTTTTCCAATCATGATGG GAGCCGCAACATTCTCAGTTTCAACGAGTTCGATTCAATTCGTTAAGTTGGCAGATTATAGTCGAAAAATCACATTATTC ACTTCAACTTTTGGTGTGCTGGGTGTCTTAGTTGCCGTCTTTTTCGTTAAAAGCTTAGATACTAGTATGTTACAGTGGCT GGTTATCATTGTGCTACTTTATTCCGCAATCAGCATGGCATTGTCCTTGCGTCAAAAGGGAGAAGCATAG
Upstream 100 bases:
>100_bases ACGCTGGAAACTTTAGATGCAGCAGCAAAGAAGGCGTTTGGTCCGGATCTCGAAGGCGTCAGAGATATTTATATGATGGA TAGAAAAGGGAAGAATGCTC
Downstream 100 bases:
>100_bases CATTGCTGTTTCAGGTTCAACAATTATAGGAGGATTATGATGCGCGTTTTAACGAAAAAAGATGTTCAAGCAGTTTACTC AATGAAAGATGCAATCGCTG
Product: hypothetical protein
Products: NA
Alternate protein names: Membrane Family Protein; Permease; Na+/Solute Symporter
Number of amino acids: Translated: 289; Mature: 289
Protein sequence:
>289_residues MIKILLGLIVLINLGFVFYFIRDLLRHRSDVMSEPATTWALPFSSFIIFLLSTFGISDFAISTALYPKAKWVSIKKLPGT LNTQCVVPVAAMALSYITAITVDIKTLAVCIIAAVIGAYIGPRFVVKLPANTIKKFVTAGLIIAALMILAGKFNWIPANG TATSLSGWKLMLTAILLFIYGALNNIGIGSYALTMATVYAMGLNPSAAFPIMMGAATFSVSTSSIQFVKLADYSRKITLF TSTFGVLGVLVAVFFVKSLDTSMLQWLVIIVLLYSAISMALSLRQKGEA
Sequences:
>Translated_289_residues MIKILLGLIVLINLGFVFYFIRDLLRHRSDVMSEPATTWALPFSSFIIFLLSTFGISDFAISTALYPKAKWVSIKKLPGT LNTQCVVPVAAMALSYITAITVDIKTLAVCIIAAVIGAYIGPRFVVKLPANTIKKFVTAGLIIAALMILAGKFNWIPANG TATSLSGWKLMLTAILLFIYGALNNIGIGSYALTMATVYAMGLNPSAAFPIMMGAATFSVSTSSIQFVKLADYSRKITLF TSTFGVLGVLVAVFFVKSLDTSMLQWLVIIVLLYSAISMALSLRQKGEA >Mature_289_residues MIKILLGLIVLINLGFVFYFIRDLLRHRSDVMSEPATTWALPFSSFIIFLLSTFGISDFAISTALYPKAKWVSIKKLPGT LNTQCVVPVAAMALSYITAITVDIKTLAVCIIAAVIGAYIGPRFVVKLPANTIKKFVTAGLIIAALMILAGKFNWIPANG TATSLSGWKLMLTAILLFIYGALNNIGIGSYALTMATVYAMGLNPSAAFPIMMGAATFSVSTSSIQFVKLADYSRKITLF TSTFGVLGVLVAVFFVKSLDTSMLQWLVIIVLLYSAISMALSLRQKGEA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31165; Mature: 31165
Theoretical pI: Translated: 10.38; Mature: 10.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKILLGLIVLINLGFVFYFIRDLLRHRSDVMSEPATTWALPFSSFIIFLLSTFGISDFA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCHHHH ISTALYPKAKWVSIKKLPGTLNTQCVVPVAAMALSYITAITVDIKTLAVCIIAAVIGAYI HHHHHCCCHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GPRFVVKLPANTIKKFVTAGLIIAALMILAGKFNWIPANGTATSLSGWKLMLTAILLFIY CCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHH GALNNIGIGSYALTMATVYAMGLNPSAAFPIMMGAATFSVSTSSIQFVKLADYSRKITLF HHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHEEEECCCEEEEEECCCCCEEEEE TSTFGVLGVLVAVFFVKSLDTSMLQWLVIIVLLYSAISMALSLRQKGEA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MIKILLGLIVLINLGFVFYFIRDLLRHRSDVMSEPATTWALPFSSFIIFLLSTFGISDFA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCHHHH ISTALYPKAKWVSIKKLPGTLNTQCVVPVAAMALSYITAITVDIKTLAVCIIAAVIGAYI HHHHHCCCHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GPRFVVKLPANTIKKFVTAGLIIAALMILAGKFNWIPANGTATSLSGWKLMLTAILLFIY CCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHH GALNNIGIGSYALTMATVYAMGLNPSAAFPIMMGAATFSVSTSSIQFVKLADYSRKITLF HHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHEEEECCCEEEEEECCCCCEEEEE TSTFGVLGVLVAVFFVKSLDTSMLQWLVIIVLLYSAISMALSLRQKGEA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA