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The map label for this gene is rbsD

Identifier: 116493875

GI number: 116493875

Start: 307452

End: 307844

Strand: Direct

Name: rbsD

Synonym: LSEI_0307

Alternate gene names: 116493875

Gene position: 307452-307844 (Clockwise)

Preceding gene: 116493874

Following gene: 116493876

Centisome position: 10.62

GC content: 40.71

Gene sequence:

>393_bases
TTGAAAAAAGGAACGGTTATTAACACGCAACTGTCACAAGTCATTGCAGATATGGGGCACTTTGATCTACTGGGAATCGG
GGATGCCGGGATGCCGGTGCCAGAAGATACCTGGAAAATTGATCTAGCTGTTTCAAAAAATCTGCCGAGTTTTATTGATG
TTCTGAAGAATGTTTTATCAGAATTGCAAGTCCAAAAGGTTTATCTGGCAGAAGAAATCAAAACTGAAAATCCGGAACAA
CTCAAGCAAATACAGCAACTCATCGATGTGCCAATAGCCTTTATACCACATGATCAAATGAAACAAGACCTCAGCAAAAC
CAAAGCCTTCGTCCGCACTGGCGAAATGACACCTTATTCGAATATTTTATTGGAAAGCGGCGTTGTTTTTTAG

Upstream 100 bases:

>100_bases
CAGTGAAGTTGATTGAGCGCGGATCGACAAAACGGATTTAAAGCATAACGTGCATCTTAAAAAATAGGGTGCAGATGCCG
AATAAGAGGAGGCGTTTTGA

Downstream 100 bases:

>100_bases
AGCGTGAGCCAGACCGTTTAGAGAGCGTGAACTGGCGCGATTAGAAACCGGAGCATAAGTAGCCTCAAGCCTAAATGGCT
TTTAGGCTTGAGGCTACTTA

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MKKGTVINTQLSQVIADMGHFDLLGIGDAGMPVPEDTWKIDLAVSKNLPSFIDVLKNVLSELQVQKVYLAEEIKTENPEQ
LKQIQQLIDVPIAFIPHDQMKQDLSKTKAFVRTGEMTPYSNILLESGVVF

Sequences:

>Translated_130_residues
MKKGTVINTQLSQVIADMGHFDLLGIGDAGMPVPEDTWKIDLAVSKNLPSFIDVLKNVLSELQVQKVYLAEEIKTENPEQ
LKQIQQLIDVPIAFIPHDQMKQDLSKTKAFVRTGEMTPYSNILLESGVVF
>Mature_130_residues
MKKGTVINTQLSQVIADMGHFDLLGIGDAGMPVPEDTWKIDLAVSKNLPSFIDVLKNVLSELQVQKVYLAEEIKTENPEQ
LKQIQQLIDVPIAFIPHDQMKQDLSKTKAFVRTGEMTPYSNILLESGVVF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=43.1654676258993, Blast_Score=126, Evalue=4e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSD_LACC3 (Q03CA5)

Other databases:

- EMBL:   CP000423
- RefSeq:   YP_805609.1
- ProteinModelPortal:   Q03CA5
- SMR:   Q03CA5
- STRING:   Q03CA5
- GeneID:   4419774
- GenomeReviews:   CP000423_GR
- KEGG:   lca:LSEI_0307
- eggNOG:   COG1869
- HOGENOM:   HBG510403
- OMA:   RAVIRTG
- PhylomeDB:   Q03CA5
- ProtClustDB:   PRK11797
- BioCyc:   LCAS321967:LSEI_0307-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01661
- InterPro:   IPR023064
- InterPro:   IPR007721

Pfam domain/function: PF05025 RbsD_FucU; SSF102546 RbsD_FucU

EC number: NA

Molecular weight: Translated: 14525; Mature: 14525

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: ACT_SITE 20-20 BINDING 28-28 BINDING 97-97

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKGTVINTQLSQVIADMGHFDLLGIGDAGMPVPEDTWKIDLAVSKNLPSFIDVLKNVLS
CCCCCEEHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHH
ELQVQKVYLAEEIKTENPEQLKQIQQLIDVPIAFIPHDQMKQDLSKTKAFVRTGEMTPYS
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHH
NILLESGVVF
HHHHHCCCCC
>Mature Secondary Structure
MKKGTVINTQLSQVIADMGHFDLLGIGDAGMPVPEDTWKIDLAVSKNLPSFIDVLKNVLS
CCCCCEEHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHH
ELQVQKVYLAEEIKTENPEQLKQIQQLIDVPIAFIPHDQMKQDLSKTKAFVRTGEMTPYS
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHH
NILLESGVVF
HHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA