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The map label for this gene is deoC [H]

Identifier: 116493846

GI number: 116493846

Start: 278369

End: 279034

Strand: Direct

Name: deoC [H]

Synonym: LSEI_0278

Alternate gene names: 116493846

Gene position: 278369-279034 (Clockwise)

Preceding gene: 116493842

Following gene: 116493847

Centisome position: 9.61

GC content: 48.8

Gene sequence:

>666_bases
ATGGCAAAACCATTGGCAAAGTACATCGATCATACTTTATTGAAACCGGATGCAACACAGGATCAAATTGATGAAGTATT
GGCACAAGCAAAACAGTACGGTTTTGCATCAGTTTGTATTAATCCCTATTGGGTTGTTCGGGCGGCGGCTAGTTTGCGCG
ACACGGATGTGAACGTCTGCACGGTTATCGGCTTTCCTCTCGGGGCAAACACCACCCAGACGAAGGTTTTCGAGACTGGA
CAGGCAATTGACGAAGGTGCTCAGGAAATCGATATGGTCCTGAATATTGGCGAATTGAAGGCAGGGCATGACGATCATGT
TCGTGCTGACATTCAGGCAGTTGCTGATATGACCCATGCTAAAGGTGGTTTGCTAAAAGTGATCATCGAAGCGGTTTTGC
TCACGGATGATGAAAAAGTCACGGCTTGCAAGTTAGCAGCTGCGGCGGGCGCTGATTATGTGAAAACATCTACTGGATTT
GCAGCAGGCGGCGCGACGGTGCACGATGTCGCTTTGATGCGCAAAACAGTTGGCGATAAACTAGGGGTTAAGGCAGCGGG
CGGCATTCACACTTATGCTGAAGCTAAGGCATTGATTGATGCTGGCGCTGATCGTCTTGGTGCCAGTGCAGGGATTCAAA
TTTTGAAGGAAGCAGGCGAAGCATAA

Upstream 100 bases:

>100_bases
AATCTGATGAATGCGTCATTTGGTAACCGCATTCATCTTCTGCAGATAAGATAAGCTTTTTGGCTGCGATCAGAAGGCTA
TTTATGACGGAGGCGTAAAA

Downstream 100 bases:

>100_bases
GATGGCATTTGATCGCATTATCACGATTGTGTTGGATTCAATCGGTATTGGTGAAGCACCTGACGCCGCTAAGTATGATG
ACACCGGCGCTGACACACTT

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MAKPLAKYIDHTLLKPDATQDQIDEVLAQAKQYGFASVCINPYWVVRAAASLRDTDVNVCTVIGFPLGANTTQTKVFETG
QAIDEGAQEIDMVLNIGELKAGHDDHVRADIQAVADMTHAKGGLLKVIIEAVLLTDDEKVTACKLAAAAGADYVKTSTGF
AAGGATVHDVALMRKTVGDKLGVKAAGGIHTYAEAKALIDAGADRLGASAGIQILKEAGEA

Sequences:

>Translated_221_residues
MAKPLAKYIDHTLLKPDATQDQIDEVLAQAKQYGFASVCINPYWVVRAAASLRDTDVNVCTVIGFPLGANTTQTKVFETG
QAIDEGAQEIDMVLNIGELKAGHDDHVRADIQAVADMTHAKGGLLKVIIEAVLLTDDEKVTACKLAAAAGADYVKTSTGF
AAGGATVHDVALMRKTVGDKLGVKAAGGIHTYAEAKALIDAGADRLGASAGIQILKEAGEA
>Mature_220_residues
AKPLAKYIDHTLLKPDATQDQIDEVLAQAKQYGFASVCINPYWVVRAAASLRDTDVNVCTVIGFPLGANTTQTKVFETGQ
AIDEGAQEIDMVLNIGELKAGHDDHVRADIQAVADMTHAKGGLLKVIIEAVLLTDDEKVTACKLAAAAGADYVKTSTGFA
AGGATVHDVALMRKTVGDKLGVKAAGGIHTYAEAKALIDAGADRLGASAGIQILKEAGEA

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=235, Percent_Identity=28.936170212766, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1790841, Length=213, Percent_Identity=31.4553990610329, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 23014; Mature: 22883

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKPLAKYIDHTLLKPDATQDQIDEVLAQAKQYGFASVCINPYWVVRAAASLRDTDVNVC
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHCCCCCCEE
TVIGFPLGANTTQTKVFETGQAIDEGAQEIDMVLNIGELKAGHDDHVRADIQAVADMTHA
EEEECCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
KGGLLKVIIEAVLLTDDEKVTACKLAAAAGADYVKTSTGFAAGGATVHDVALMRKTVGDK
CCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHH
LGVKAAGGIHTYAEAKALIDAGADRLGASAGIQILKEAGEA
CCCCCCCCCHHHHHHHHHHHHCHHHHCHHHHHHHHHHCCCC
>Mature Secondary Structure 
AKPLAKYIDHTLLKPDATQDQIDEVLAQAKQYGFASVCINPYWVVRAAASLRDTDVNVC
CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHCCCCCCEE
TVIGFPLGANTTQTKVFETGQAIDEGAQEIDMVLNIGELKAGHDDHVRADIQAVADMTHA
EEEECCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
KGGLLKVIIEAVLLTDDEKVTACKLAAAAGADYVKTSTGFAAGGATVHDVALMRKTVGDK
CCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHH
LGVKAAGGIHTYAEAKALIDAGADRLGASAGIQILKEAGEA
CCCCCCCCCHHHHHHHHHHHHCHHHHCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA