Click here to switch to the map view.

The map label for this gene is yvdC [H]

Identifier: 116493842

GI number: 116493842

Start: 274260

End: 274595

Strand: Direct

Name: yvdC [H]

Synonym: LSEI_0274

Alternate gene names: 116493842

Gene position: 274260-274595 (Clockwise)

Preceding gene: 116493841

Following gene: 116493846

Centisome position: 9.47

GC content: 45.54

Gene sequence:

>336_bases
ATGAATCTGAAGGACCATCAGAAATGGTTAATTGATTTTTATCAGCAACGCCATTGGTATCAATATTCACCGTTCATTCG
GCTTAATTTTCTCACTGAGGAAACTGGCGAATTGTCGCGCGCCATTCGGGCAATCGAAATTGGTCGTGACCATCCAGGCG
AAAAACAAGCAGGCACATCTGCTCTAAGGGCTAACCTGACCGAGGAATTAGCGGATGTCTTGGATCAGGTTCTGATTATC
AGCGCTAAGTTCGGTATCGATCCGGAGACGTTGCTTGCCCAAAGTGAACATAAGTTGCAGGCGCGGTTTAAGGATGAACT
TAAACATAGGTCATGA

Upstream 100 bases:

>100_bases
CACAAAAAGTCGCTTAGCAAACTGTCCGAAAAAGTGTTGACTTCCCTTATCCACTTGAGAAATAAAACGGCCCACGTCAT
TTTGAAAAATGGAGGCTTTT

Downstream 100 bases:

>100_bases
CTTGGGTCGAGGTCGTATTAATCCAAACAGGTTGAAACATTATTCACAGTTATCGAAAAAAGGTGAGGTTACGTCATAAT
TCTCATCCAACAATTAAAAA

Product: pyrophosphatase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 111

Protein sequence:

>111_residues
MNLKDHQKWLIDFYQQRHWYQYSPFIRLNFLTEETGELSRAIRAIEIGRDHPGEKQAGTSALRANLTEELADVLDQVLII
SAKFGIDPETLLAQSEHKLQARFKDELKHRS

Sequences:

>Translated_111_residues
MNLKDHQKWLIDFYQQRHWYQYSPFIRLNFLTEETGELSRAIRAIEIGRDHPGEKQAGTSALRANLTEELADVLDQVLII
SAKFGIDPETLLAQSEHKLQARFKDELKHRS
>Mature_111_residues
MNLKDHQKWLIDFYQQRHWYQYSPFIRLNFLTEETGELSRAIRAIEIGRDHPGEKQAGTSALRANLTEELADVLDQVLII
SAKFGIDPETLLAQSEHKLQARFKDELKHRS

Specific function: Unknown

COG id: COG1694

COG function: function code R; Predicted pyrophosphatase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011411
- InterPro:   IPR004518 [H]

Pfam domain/function: PF03819 MazG [H]

EC number: NA

Molecular weight: Translated: 12976; Mature: 12976

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLKDHQKWLIDFYQQRHWYQYSPFIRLNFLTEETGELSRAIRAIEIGRDHPGEKQAGTS
CCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCHHHHH
ALRANLTEELADVLDQVLIISAKFGIDPETLLAQSEHKLQARFKDELKHRS
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNLKDHQKWLIDFYQQRHWYQYSPFIRLNFLTEETGELSRAIRAIEIGRDHPGEKQAGTS
CCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCHHHHH
ALRANLTEELADVLDQVLIISAKFGIDPETLLAQSEHKLQARFKDELKHRS
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]