| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
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The map label for this gene is trxA [H]
Identifier: 116493829
GI number: 116493829
Start: 264629
End: 264943
Strand: Direct
Name: trxA [H]
Synonym: LSEI_0261
Alternate gene names: 116493829
Gene position: 264629-264943 (Clockwise)
Preceding gene: 116493827
Following gene: 116493830
Centisome position: 9.14
GC content: 46.03
Gene sequence:
>315_bases ATGGCAATTGAGGCAACGAAAGATAACTTGAAGGCATTGACAGCTGAAGGCACGGTTGTCGTTGATTTTTGGGCACCGTG GTGCGGCCCTTGTAAAGTGCTTGATCCGATGTTAACGGCCCTAGAGCAAGAACTGCCAGCGCTTAAGGTGGTTCGTTATA ATGTTGAAAAAGATCATACGTTGCCGAGCACTATGGGCATTATGTCAGTACCCACCTTAGTCATTTATCAGCAAGGAGAG GCGCGCGAAAAAGTGACAGGTGTTTACCCTAAAGACAAACTTAAACGGTATTTTGAACAGAAACTTGAGGCGTAG
Upstream 100 bases:
>100_bases AAGTTAGGATCTGGTCATTGACCGGATCTTTTTTTATACCTTGATAAGTAAGTGGCAGTCGTGCTAAATTGCAAGAGCAA GCATGGAAGGGGATCACATC
Downstream 100 bases:
>100_bases GTATGACACATTCAGTTGAGCGTCAGGATACAGCAATCCAAAATCAAGTATTGGCAACATGCTTGCTTGCTGGACGCATT ATGATTGAAGGCGGTTCGGA
Product: Thiol-disulfide isomerase and thioredoxin
Products: NA
Alternate protein names: Trx [H]
Number of amino acids: Translated: 104; Mature: 103
Protein sequence:
>104_residues MAIEATKDNLKALTAEGTVVVDFWAPWCGPCKVLDPMLTALEQELPALKVVRYNVEKDHTLPSTMGIMSVPTLVIYQQGE AREKVTGVYPKDKLKRYFEQKLEA
Sequences:
>Translated_104_residues MAIEATKDNLKALTAEGTVVVDFWAPWCGPCKVLDPMLTALEQELPALKVVRYNVEKDHTLPSTMGIMSVPTLVIYQQGE AREKVTGVYPKDKLKRYFEQKLEA >Mature_103_residues AIEATKDNLKALTAEGTVVVDFWAPWCGPCKVLDPMLTALEQELPALKVVRYNVEKDHTLPSTMGIMSVPTLVIYQQGEA REKVTGVYPKDKLKRYFEQKLEA
Specific function: Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions [H]
COG id: COG0526
COG function: function code OC; Thiol-disulfide isomerase and thioredoxins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Escherichia coli, GI1788936, Length=102, Percent_Identity=36.2745098039216, Blast_Score=78, Evalue=1e-16, Organism=Escherichia coli, GI87082331, Length=103, Percent_Identity=33.9805825242718, Blast_Score=75, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6323072, Length=79, Percent_Identity=31.6455696202532, Blast_Score=61, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6319925, Length=72, Percent_Identity=34.7222222222222, Blast_Score=60, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005746 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR017937 - InterPro: IPR013766 - InterPro: IPR012335 [H]
Pfam domain/function: PF00085 Thioredoxin [H]
EC number: 1.8.1.8 [C]
Molecular weight: Translated: 11697; Mature: 11566
Theoretical pI: Translated: 5.88; Mature: 5.88
Prosite motif: PS00194 THIOREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIEATKDNLKALTAEGTVVVDFWAPWCGPCKVLDPMLTALEQELPALKVVRYNVEKDHT CCCCCCCCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCC LPSTMGIMSVPTLVIYQQGEAREKVTGVYPKDKLKRYFEQKLEA CCCHHHHHHCCEEEEECCCCCCHHHCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure AIEATKDNLKALTAEGTVVVDFWAPWCGPCKVLDPMLTALEQELPALKVVRYNVEKDHT CCCCCCCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCC LPSTMGIMSVPTLVIYQQGEAREKVTGVYPKDKLKRYFEQKLEA CCCHHHHHHCCEEEEECCCCCCHHHCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2559145; 8969504; 9384377; 8755892 [H]