Click here to switch to the map view.

The map label for this gene is 116493597

Identifier: 116493597

GI number: 116493597

Start: 25151

End: 25702

Strand: Direct

Name: 116493597

Synonym: LSEI_0023

Alternate gene names: NA

Gene position: 25151-25702 (Clockwise)

Preceding gene: 116493592

Following gene: 116493598

Centisome position: 0.87

GC content: 44.75

Gene sequence:

>552_bases
ATGTCGGGGACGAAGGATAATCGGCGGGTTCAGTATACGATGGATCGATTTAAAGACGCTTTGTTGCATATTTTGGCGAC
GAAACCATTGGATGAGGTCACGGTGACTGAGCTTTGTCGACAGGCAGATTTGAATCGCGGGACGTTTTACTTACATTTTC
AATCTCCACGCGATTTGTTCGAACGCATTGAAATGGATTTGGTCGAGGCAATTCGGCCTTATCTAACGGTTAAAATAAAC
GATATGGCCACATGGTTGGTGCCGATTTTAAATGTCATTGCCAATCAGCCGCAAGCAGCAGCGATTATTTTGAATAATCC
TGATAGCGTGGTGTTGAAGAAGATAACGGATCCAATTCGACAAAAAACAGAAACCAGCTATCAATCGTGGTATGGTGAGA
CCGACAAAAGTGTTCTCACTTACTACTACGCGTTCTTCATTGACGGGGCAATTGGCGTGCTGACAAAATGGTTGAAAAAT
GGCACGGTTGAGCATTCTGAACAGATTGCGGCGGTGATCGAAAATGTCGTGACTAAAGGCGCACCGCATTAA

Upstream 100 bases:

>100_bases
TCATAACATTATGTTAGATTTAAACCGGCCGTTCAAGGACAGAAATGGTCGTTTTGTTTTTAAATGGACAACTTGTTCAA
ATGATGTTCGGAGGATGACG

Downstream 100 bases:

>100_bases
ATTATAGCAAGTGAAATTAGACAAATAATATAGGGGAATTAGCATGCAGAATGTAAAATTAATTGCGAGTGACATGGACC
AGACTTTACTGACAAGTGCA

Product: transcriptional regulator

Products: NA

Alternate protein names: TetR Family Transcriptional Regulator; Transcriptional Regulator TetR Family; TetR/AcrR Family Transcriptional Regulator; TetR Family HTH Transcriptional Regulator; Transcription Regulator; Regulatory Protein TetR

Number of amino acids: Translated: 183; Mature: 182

Protein sequence:

>183_residues
MSGTKDNRRVQYTMDRFKDALLHILATKPLDEVTVTELCRQADLNRGTFYLHFQSPRDLFERIEMDLVEAIRPYLTVKIN
DMATWLVPILNVIANQPQAAAIILNNPDSVVLKKITDPIRQKTETSYQSWYGETDKSVLTYYYAFFIDGAIGVLTKWLKN
GTVEHSEQIAAVIENVVTKGAPH

Sequences:

>Translated_183_residues
MSGTKDNRRVQYTMDRFKDALLHILATKPLDEVTVTELCRQADLNRGTFYLHFQSPRDLFERIEMDLVEAIRPYLTVKIN
DMATWLVPILNVIANQPQAAAIILNNPDSVVLKKITDPIRQKTETSYQSWYGETDKSVLTYYYAFFIDGAIGVLTKWLKN
GTVEHSEQIAAVIENVVTKGAPH
>Mature_182_residues
SGTKDNRRVQYTMDRFKDALLHILATKPLDEVTVTELCRQADLNRGTFYLHFQSPRDLFERIEMDLVEAIRPYLTVKIND
MATWLVPILNVIANQPQAAAIILNNPDSVVLKKITDPIRQKTETSYQSWYGETDKSVLTYYYAFFIDGAIGVLTKWLKNG
TVEHSEQIAAVIENVVTKGAPH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20875; Mature: 20744

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGTKDNRRVQYTMDRFKDALLHILATKPLDEVTVTELCRQADLNRGTFYLHFQSPRDLF
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHH
ERIEMDLVEAIRPYLTVKINDMATWLVPILNVIANQPQAAAIILNNPDSVVLKKITDPIR
HHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHH
QKTETSYQSWYGETDKSVLTYYYAFFIDGAIGVLTKWLKNGTVEHSEQIAAVIENVVTKG
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
APH
CCC
>Mature Secondary Structure 
SGTKDNRRVQYTMDRFKDALLHILATKPLDEVTVTELCRQADLNRGTFYLHFQSPRDLF
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHH
ERIEMDLVEAIRPYLTVKINDMATWLVPILNVIANQPQAAAIILNNPDSVVLKKITDPIR
HHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHH
QKTETSYQSWYGETDKSVLTYYYAFFIDGAIGVLTKWLKNGTVEHSEQIAAVIENVVTKG
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
APH
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA