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The map label for this gene is rpoE

Identifier: 116493300

GI number: 116493300

Start: 1542046

End: 1542582

Strand: Reverse

Name: rpoE

Synonym: PEPE_1572

Alternate gene names: 116493300

Gene position: 1542582-1542046 (Counterclockwise)

Preceding gene: 116493301

Following gene: 116493299

Centisome position: 84.18

GC content: 37.99

Gene sequence:

>537_bases
TTGGAATTAGAAAATTTTAAGGGTCAAAACAAAAACGAACTCTCAATGATCGAAGTTGCCCACGCTATTTTAGCTAAGAG
TGGTGAACCAATGGCTTTTGTTGATTTAGCCAACGCGGTTCAGAGTTATTTAGATAAGACAGATGAGGAATTTAGAAATC
GATTATCACAATTTTATACTGATTTAAACGTTGACGGAAGTTTTATTTCCTTGGGCGAAAATACATGGGGACTTCGTACT
TGGTACCCATTCGAATCAATTGATGAAGCCTTAATTCACGCTGAAGATGAAGACGAAGACCGTCCTGTACGTAAAAAACG
TAAGAAGGTTAATGCCTTTCTTGCTGATGCAGCTGATGACGATGATGTAATTGACTACGATTCTGATGATCCAGAAGATG
AAGAAGTCGAAGCTGAAGATACTACATCAGATGACGCTCCAGCATTTGAAGATCTTTCTAACGATGACGATACTGATGTT
CTTCCAGATGGAATTGAAGGTCAACTATCAGAATTAAACGAAGATGACGAAAACTAA

Upstream 100 bases:

>100_bases
TTGCAGGAGAACAGTTGATTGGTAACTACAAAATCCGATTGCAATTTACTGCTTAATTGTAGTATTATTTGAGATAGACT
GTGGAAAGGACGTGCACCAG

Downstream 100 bases:

>100_bases
ATATACAAACTTGACTTATAGTCTGTAACTCTGTATTATATTTTTTGGGCTCTGGAGATCCTTTTGAGGATTTTTCAGAC
AATGAACGGTAATACCCCCT

Product: DNA-directed RNA polymerase, delta subunit

Products: diphosphate; RNAn+1

Alternate protein names: RNAP delta factor

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MELENFKGQNKNELSMIEVAHAILAKSGEPMAFVDLANAVQSYLDKTDEEFRNRLSQFYTDLNVDGSFISLGENTWGLRT
WYPFESIDEALIHAEDEDEDRPVRKKRKKVNAFLADAADDDDVIDYDSDDPEDEEVEAEDTTSDDAPAFEDLSNDDDTDV
LPDGIEGQLSELNEDDEN

Sequences:

>Translated_178_residues
MELENFKGQNKNELSMIEVAHAILAKSGEPMAFVDLANAVQSYLDKTDEEFRNRLSQFYTDLNVDGSFISLGENTWGLRT
WYPFESIDEALIHAEDEDEDRPVRKKRKKVNAFLADAADDDDVIDYDSDDPEDEEVEAEDTTSDDAPAFEDLSNDDDTDV
LPDGIEGQLSELNEDDEN
>Mature_178_residues
MELENFKGQNKNELSMIEVAHAILAKSGEPMAFVDLANAVQSYLDKTDEEFRNRLSQFYTDLNVDGSFISLGENTWGLRT
WYPFESIDEALIHAEDEDEDRPVRKKRKKVNAFLADAADDDDVIDYDSDDPEDEEVEAEDTTSDDAPAFEDLSNDDDTDV
LPDGIEGQLSELNEDDEN

Specific function: Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis

COG id: COG3343

COG function: function code K; DNA-directed RNA polymerase, delta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rpoE family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOE_PEDPA (Q03DX9)

Other databases:

- EMBL:   CP000422
- RefSeq:   YP_805035.1
- STRING:   Q03DX9
- GeneID:   4417204
- GenomeReviews:   CP000422_GR
- KEGG:   ppe:PEPE_1572
- NMPDR:   fig|278197.10.peg.1381
- eggNOG:   COG3343
- HOGENOM:   HBG535252
- OMA:   TDMNTDG
- BioCyc:   PPEN278197:PEPE_1572-MONOMER
- HAMAP:   MF_00357
- InterPro:   IPR007759
- PANTHER:   PTHR23405:SF1

Pfam domain/function: PF05066 RNA_pol_delta

EC number: 2.7.7.6

Molecular weight: Translated: 20136; Mature: 20136

Theoretical pI: Translated: 3.64; Mature: 3.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELENFKGQNKNELSMIEVAHAILAKSGEPMAFVDLANAVQSYLDKTDEEFRNRLSQFYT
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
DLNVDGSFISLGENTWGLRTWYPFESIDEALIHAEDEDEDRPVRKKRKKVNAFLADAADD
CCCCCCCEEEECCCCCCCEEECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCC
DDVIDYDSDDPEDEEVEAEDTTSDDAPAFEDLSNDDDTDVLPDGIEGQLSELNEDDEN
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHCCCCCCC
>Mature Secondary Structure
MELENFKGQNKNELSMIEVAHAILAKSGEPMAFVDLANAVQSYLDKTDEEFRNRLSQFYT
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
DLNVDGSFISLGENTWGLRTWYPFESIDEALIHAEDEDEDRPVRKKRKKVNAFLADAADD
CCCCCCCEEEECCCCCCCEEECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCC
DDVIDYDSDDPEDEEVEAEDTTSDDAPAFEDLSNDDDTDVLPDGIEGQLSELNEDDEN
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: nucleoside triphosphate; RNAn

Specific reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA