Click here to switch to the map view.

The map label for this gene is 116493240

Identifier: 116493240

GI number: 116493240

Start: 1469581

End: 1470711

Strand: Reverse

Name: 116493240

Synonym: PEPE_1502

Alternate gene names: NA

Gene position: 1470711-1469581 (Counterclockwise)

Preceding gene: 116493241

Following gene: 116493239

Centisome position: 80.26

GC content: 36.16

Gene sequence:

>1131_bases
ATGAAAAATATTAAAAAACGAATTGTCCAAGCGGTGTTTGCTTTAGCTGGTGGTACTTTAGGAATGTCGTATCTACCAGT
TGTTTGGTCGTTATCAAATTTGGATAAGTTTATTTTATTAAACAATCGCGTAACGGGCTTTGTTATTGGTGCAATTATTT
TCTGGGTTCTATCTATCTTTTTGGCTGGTTATGTATTGAGTTTAATGAGACAAGCAGAAAAAATGTTAACTAAATCTTCG
CCAATCTATTTAATTACTAGTGGTGTTGGAACGGTCATTGGATTGGTCATTGCTATTTTAATTTCCACTTTATTTTATCG
ATCAGATGTCTTCTTTATTAATACGATGATTCCATTAATTTTAATGTTGATTTTGGGTTATTTAGGTTTTCGAATTGGAA
CAACTCGGCTAAACGAGTGGAAAAAATTATTCCAAGTTCGCAAACGTGATTTAAATAATCAAGATCAAGTGTTGGAGCGT
CGAGCAGGTGAAAATTACCATCACTACAAGATTTTAGATACTAATATCTTAATTGATGGGCGAGTATACGATTTAGTAAA
AACTGGATTGTTAGAGGGAACTTTATTAGTTCCTAACTTTGTCTTATACGAACTACAATACATTGCCGATTCTGCTGATA
GCATTAAGCGGGTGCGTGGACGCCGAGGCTTAGACTTCTTAAACAAGCTTCAAAATGAAAAGATTATGCCAATTGAAATG
TACGATGGCGATTATGAAGAAATTGAAGAAGTCGATAGCAAACTAATCCAACTTGCTAAGGACAAGGACGCCGTAATTGT
GACGAACGATTATAACTTGAATAAAGTTAGTCAATTTCAGAATGTCCAAGTGTTAAATATCAACGAGTTGGCTAATGCGT
TGAAACCACGAGTAATTCCAGGTGAAACGATGAAAGTACACGTCGTTAAGAATGGTACAGAACGGCAACAAGGGGTTGCC
TATTTGGACGACGGGACGATGGTTGTTGTGGAAGATGGTAAGTTTTATATCAGTGAAACAATTGACGTCGTAGTTACGAG
TGCAATTCAAACTGATGCGGGTCGAATGATTTTTGCTAAACCGGTTCACTCCACTAAGGAAATTACCCATAGCAAAGATA
AGACAGAATAG

Upstream 100 bases:

>100_bases
TGAAGGGTTGGAATCCACCTAAAGGGATTGAAGTAGTAGGAGTAACAACGATTACGGACGCAATTCGGAAGGCGTTTAAT
TAGAAAGGAGGTGAATTAAA

Downstream 100 bases:

>100_bases
ACTTTATTTATTATTGATATCAATGTAGAATGAAAACATTGTGACATAATTTTTGGAGAGGTGTTAATTTTGGCAAAGCA
AAAGATTCGAGTACGTTATG

Product: integral membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MKNIKKRIVQAVFALAGGTLGMSYLPVVWSLSNLDKFILLNNRVTGFVIGAIIFWVLSIFLAGYVLSLMRQAEKMLTKSS
PIYLITSGVGTVIGLVIAILISTLFYRSDVFFINTMIPLILMLILGYLGFRIGTTRLNEWKKLFQVRKRDLNNQDQVLER
RAGENYHHYKILDTNILIDGRVYDLVKTGLLEGTLLVPNFVLYELQYIADSADSIKRVRGRRGLDFLNKLQNEKIMPIEM
YDGDYEEIEEVDSKLIQLAKDKDAVIVTNDYNLNKVSQFQNVQVLNINELANALKPRVIPGETMKVHVVKNGTERQQGVA
YLDDGTMVVVEDGKFYISETIDVVVTSAIQTDAGRMIFAKPVHSTKEITHSKDKTE

Sequences:

>Translated_376_residues
MKNIKKRIVQAVFALAGGTLGMSYLPVVWSLSNLDKFILLNNRVTGFVIGAIIFWVLSIFLAGYVLSLMRQAEKMLTKSS
PIYLITSGVGTVIGLVIAILISTLFYRSDVFFINTMIPLILMLILGYLGFRIGTTRLNEWKKLFQVRKRDLNNQDQVLER
RAGENYHHYKILDTNILIDGRVYDLVKTGLLEGTLLVPNFVLYELQYIADSADSIKRVRGRRGLDFLNKLQNEKIMPIEM
YDGDYEEIEEVDSKLIQLAKDKDAVIVTNDYNLNKVSQFQNVQVLNINELANALKPRVIPGETMKVHVVKNGTERQQGVA
YLDDGTMVVVEDGKFYISETIDVVVTSAIQTDAGRMIFAKPVHSTKEITHSKDKTE
>Mature_376_residues
MKNIKKRIVQAVFALAGGTLGMSYLPVVWSLSNLDKFILLNNRVTGFVIGAIIFWVLSIFLAGYVLSLMRQAEKMLTKSS
PIYLITSGVGTVIGLVIAILISTLFYRSDVFFINTMIPLILMLILGYLGFRIGTTRLNEWKKLFQVRKRDLNNQDQVLER
RAGENYHHYKILDTNILIDGRVYDLVKTGLLEGTLLVPNFVLYELQYIADSADSIKRVRGRRGLDFLNKLQNEKIMPIEM
YDGDYEEIEEVDSKLIQLAKDKDAVIVTNDYNLNKVSQFQNVQVLNINELANALKPRVIPGETMKVHVVKNGTERQQGVA
YLDDGTMVVVEDGKFYISETIDVVVTSAIQTDAGRMIFAKPVHSTKEITHSKDKTE

Specific function: Unknown

COG id: COG4956

COG function: function code R; Integral membrane protein (PIN domain superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TRAM domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002716
- InterPro:   IPR006596
- InterPro:   IPR002792 [H]

Pfam domain/function: PF01850 PIN [H]

EC number: NA

Molecular weight: Translated: 42562; Mature: 42562

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: PS50926 TRAM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNIKKRIVQAVFALAGGTLGMSYLPVVWSLSNLDKFILLNNRVTGFVIGAIIFWVLSIF
CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHH
LAGYVLSLMRQAEKMLTKSSPIYLITSGVGTVIGLVIAILISTLFYRSDVFFINTMIPLI
HHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
LMLILGYLGFRIGTTRLNEWKKLFQVRKRDLNNQDQVLERRAGENYHHYKILDTNILIDG
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEECEEEECC
RVYDLVKTGLLEGTLLVPNFVLYELQYIADSADSIKRVRGRRGLDFLNKLQNEKIMPIEM
HHHHHHHHHHHCCEECCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHCCCCEEEEEE
YDGDYEEIEEVDSKLIQLAKDKDAVIVTNDYNLNKVSQFQNVQVLNINELANALKPRVIP
CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCEEEEEHHHHHHHHCCCCCC
GETMKVHVVKNGTERQQGVAYLDDGTMVVVEDGKFYISETIDVVVTSAIQTDAGRMIFAK
CCCEEEEEEECCCCHHCCEEEECCCEEEEEECCCEEEHHHHHHHHHHHHHCCCCCEEEEC
PVHSTKEITHSKDKTE
CCCCHHHHHCCCCCCC
>Mature Secondary Structure
MKNIKKRIVQAVFALAGGTLGMSYLPVVWSLSNLDKFILLNNRVTGFVIGAIIFWVLSIF
CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHH
LAGYVLSLMRQAEKMLTKSSPIYLITSGVGTVIGLVIAILISTLFYRSDVFFINTMIPLI
HHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
LMLILGYLGFRIGTTRLNEWKKLFQVRKRDLNNQDQVLERRAGENYHHYKILDTNILIDG
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEECEEEECC
RVYDLVKTGLLEGTLLVPNFVLYELQYIADSADSIKRVRGRRGLDFLNKLQNEKIMPIEM
HHHHHHHHHHHCCEECCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHCCCCEEEEEE
YDGDYEEIEEVDSKLIQLAKDKDAVIVTNDYNLNKVSQFQNVQVLNINELANALKPRVIP
CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCEEEEEHHHHHHHHCCCCCC
GETMKVHVVKNGTERQQGVAYLDDGTMVVVEDGKFYISETIDVVVTSAIQTDAGRMIFAK
CCCEEEEEEECCCCHHCCEEEECCCEEEEEECCCEEEHHHHHHHHHHHHHCCCCCEEEEC
PVHSTKEITHSKDKTE
CCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8885268; 11679669 [H]