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The map label for this gene is yecD [C]

Identifier: 116493206

GI number: 116493206

Start: 1441940

End: 1442437

Strand: Reverse

Name: yecD [C]

Synonym: PEPE_1468

Alternate gene names: 116493206

Gene position: 1442437-1441940 (Counterclockwise)

Preceding gene: 116493208

Following gene: 116493205

Centisome position: 78.72

GC content: 28.71

Gene sequence:

>498_bases
ATGATAACTTCAGATGCATTGTTAGTGATTGATTTACAAAATGGAGTATGCAGAGGTAGAACAGATATTGATCATTTAGA
AAAATTAATTTTACAAGTAAACCAATTAATTCAGTGTTATCGAAAAAAGGAAAAAGAGATTATTTTTATTCAGCACAACG
AGGTTGGATTAGTGTGTGGCTCTACTAATTGGAAAATTCTTCCTGAAATAAATAACAAAATAACAGACATTTATGTAGAT
AAAACCCATGCTAACTCTTTTTATCTCACTAATTTAGAAAAAATTTTAAAAAGCAAAAACATTCATTCAATCGAGATTTG
TGGGGCTCAAACGCAATATTGTATTGATAGTACAGTTAAAATGGCGCATGGACTAGGCTATAACTTACAAATGCAGAAAA
ATGGTACAACAACTTATGATAATGAATTTATGACTGCTAAGGATACAATCGATTTTTATGAAGATATTTGGAAAGATCGC
TTTTTAAAACTATATTAA

Upstream 100 bases:

>100_bases
TTGATTATCATATTATCATAAGAAACTGAAGTTGTAAAACATAAATTTGTTGACAGATAAATAAAAAAGCGTATTTTAAA
AATAAAACTAGGTGGAAAGT

Downstream 100 bases:

>100_bases
TTTCCAAAAAGCTTTGATGTAGCTAAATACTGCATTAAGGCTTTTTTTTATTAATTTCCGAGCTTTTAATTAACGTATCG
AACTGTTTATTTTTAAAAAA

Product: amidase

Products: NA

Alternate protein names: Isochorismatase Family Protein; Isochorismatase; Amidase; Hydrolase; Acetyltransferase GNAT Family; Isochorismatase/Nicotamidase Family Hydrolase; Amidohydrolase; Isochorismatase Protein; Nicotinamidase-Like Amidase; Amidase Nicotinamidase Family; 2 3-Dihydro-2 3-Dihydroxybenzoate Synthetase; Hydrolase Isochorismatase Family; Isochorismatase Hydrolase Protein; Acetyltransferase; Isochorismatase Family Hydrolase

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MITSDALLVIDLQNGVCRGRTDIDHLEKLILQVNQLIQCYRKKEKEIIFIQHNEVGLVCGSTNWKILPEINNKITDIYVD
KTHANSFYLTNLEKILKSKNIHSIEICGAQTQYCIDSTVKMAHGLGYNLQMQKNGTTTYDNEFMTAKDTIDFYEDIWKDR
FLKLY

Sequences:

>Translated_165_residues
MITSDALLVIDLQNGVCRGRTDIDHLEKLILQVNQLIQCYRKKEKEIIFIQHNEVGLVCGSTNWKILPEINNKITDIYVD
KTHANSFYLTNLEKILKSKNIHSIEICGAQTQYCIDSTVKMAHGLGYNLQMQKNGTTTYDNEFMTAKDTIDFYEDIWKDR
FLKLY
>Mature_165_residues
MITSDALLVIDLQNGVCRGRTDIDHLEKLILQVNQLIQCYRKKEKEIIFIQHNEVGLVCGSTNWKILPEINNKITDIYVD
KTHANSFYLTNLEKILKSKNIHSIEICGAQTQYCIDSTVKMAHGLGYNLQMQKNGTTTYDNEFMTAKDTIDFYEDIWKDR
FLKLY

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19171; Mature: 19171

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITSDALLVIDLQNGVCRGRTDIDHLEKLILQVNQLIQCYRKKEKEIIFIQHNEVGLVCG
CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEC
STNWKILPEINNKITDIYVDKTHANSFYLTNLEKILKSKNIHSIEICGAQTQYCIDSTVK
CCCCEEEECCCCCEEEEEEECCCCCEEEEHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH
MAHGLGYNLQMQKNGTTTYDNEFMTAKDTIDFYEDIWKDRFLKLY
HHHCCCCEEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHEECC
>Mature Secondary Structure
MITSDALLVIDLQNGVCRGRTDIDHLEKLILQVNQLIQCYRKKEKEIIFIQHNEVGLVCG
CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEC
STNWKILPEINNKITDIYVDKTHANSFYLTNLEKILKSKNIHSIEICGAQTQYCIDSTVK
CCCCEEEECCCCCEEEEEEECCCCCEEEEHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH
MAHGLGYNLQMQKNGTTTYDNEFMTAKDTIDFYEDIWKDRFLKLY
HHHCCCCEEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA