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The map label for this gene is lytR [H]

Identifier: 116493179

GI number: 116493179

Start: 1415679

End: 1416998

Strand: Direct

Name: lytR [H]

Synonym: PEPE_1441

Alternate gene names: 116493179

Gene position: 1415679-1416998 (Clockwise)

Preceding gene: 116493178

Following gene: 116493189

Centisome position: 77.26

GC content: 39.62

Gene sequence:

>1320_bases
ATGAATTCTGAATCACCCAGATCCAATTCAAGCCGATTCAGCAGAAACCGGTTCAATTACACACCTGATGACAATAATAA
CAATGGTGACAACGGTCAAAATAAACAAAACCAGCGCCGAAAACCACGAAAGAAACGACCTCGTAGAAAAAAAACCATCA
TTGTCGTTTCCATTATTGCTGTTATATTGGCTATCTTTGGGGTTAAGAAATGGTACGATGCCAAAAATGCTGTAGATTCG
ATTTTTGATAGTGCTAAAATCCAGAAATCACGTGATGTTTCAGCTACCTTAAAGCAAAGTAAACCAATTTCAATTTTGCT
TTTAGGTACTGATACTGGGGCCCTCGGGCGTAATTATCGTGGCCGAACAGATACCATTATCGTGGCAACCTTGAATCCTA
AAAAGAAAAAAATGACTTTAACTAGCATCCCTCGGGATACGGTTATGTCGATTCCTGGTTACTCAAATTATTCTCCTTCC
AAGATTAACGCTGCTTATGATTTAGGTGGAGCCGGTACAGCAATCAAAGCTGTCGAAAAACTACTAAATATTCCCATTGA
TTATTACGGCTTAATTAACATGGGTGGCTTAGAAAAGATTGTTGACGGGGTTGGTGGAATCGATATCACTCCTAAATTAA
CCTTCAAATATGGACATGCCGACGTTACTAAAGGTAAAAAAATTCATCTAAATGGTAAGGCAGCACTGGATTATTCACGG
ATGCGTTATACCGATCCAAACGGTGACTATGGTCGTCAAACTCGTCAACGCCAAGTTTTAATGGCCATTTTACGTAAGAG
TGATTCAATTACGGCTTTATTAAACCAAAATTTCTTAAATTCTCTTCAAAAACAAACTAAAACTGATTTAACATTTAATG
AACTTTTAGCACTCTCGACTAATTATCGAGTTGCTACCCATCATTTAAAGTCTACTCACCTCCAAGGTAATGGTACTACC
ATCGATGGTGGTTCTTATGAATTAGTTTCTAAGAGCGAACGTCAGCGTGTTACTAATTTCATCCGTAAAGCCCTTGATTT
ATCTGCTAAAGAAACTGGGACAACTGGATTAAGCAGTATCTATACTGGCGAAGAAGATGATACCGATACTACCAATTCAG
ATACTAACAGTTCAGACACTACTAGCTCCTCCACTGAAGATTACGGAACCACAAGCGCATCTTCGGTGGAGACACCGGCT
AGTGACACAACAGGCGGTGCAGATAACAACGGAGCTACCACTGATAACACTCCTACAACTCCATCACAAGCTGATCCGCA
AGGAAATGCTACTGGTAACTACAACTACTACGGACAATAA

Upstream 100 bases:

>100_bases
ACTATTTGTTAAACTTTCTTAAACAAAGTTATAGATAATCCATTAATTTGGTATCATATTAATGATTGAATTTTTTAGTA
TAACTCGGAGGATAAGTTGC

Downstream 100 bases:

>100_bases
AGCTTTAATTAAAGAACAAAGGGCAATCCTGATTTTAAATCGGGATTGCCCTTTTTATAATTATTCCGTTAATAGCTTCT
CTGCCAATGCAAAATTACCG

Product: transcriptional regulator

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MNSESPRSNSSRFSRNRFNYTPDDNNNNGDNGQNKQNQRRKPRKKRPRRKKTIIVVSIIAVILAIFGVKKWYDAKNAVDS
IFDSAKIQKSRDVSATLKQSKPISILLLGTDTGALGRNYRGRTDTIIVATLNPKKKKMTLTSIPRDTVMSIPGYSNYSPS
KINAAYDLGGAGTAIKAVEKLLNIPIDYYGLINMGGLEKIVDGVGGIDITPKLTFKYGHADVTKGKKIHLNGKAALDYSR
MRYTDPNGDYGRQTRQRQVLMAILRKSDSITALLNQNFLNSLQKQTKTDLTFNELLALSTNYRVATHHLKSTHLQGNGTT
IDGGSYELVSKSERQRVTNFIRKALDLSAKETGTTGLSSIYTGEEDDTDTTNSDTNSSDTTSSSTEDYGTTSASSVETPA
SDTTGGADNNGATTDNTPTTPSQADPQGNATGNYNYYGQ

Sequences:

>Translated_439_residues
MNSESPRSNSSRFSRNRFNYTPDDNNNNGDNGQNKQNQRRKPRKKRPRRKKTIIVVSIIAVILAIFGVKKWYDAKNAVDS
IFDSAKIQKSRDVSATLKQSKPISILLLGTDTGALGRNYRGRTDTIIVATLNPKKKKMTLTSIPRDTVMSIPGYSNYSPS
KINAAYDLGGAGTAIKAVEKLLNIPIDYYGLINMGGLEKIVDGVGGIDITPKLTFKYGHADVTKGKKIHLNGKAALDYSR
MRYTDPNGDYGRQTRQRQVLMAILRKSDSITALLNQNFLNSLQKQTKTDLTFNELLALSTNYRVATHHLKSTHLQGNGTT
IDGGSYELVSKSERQRVTNFIRKALDLSAKETGTTGLSSIYTGEEDDTDTTNSDTNSSDTTSSSTEDYGTTSASSVETPA
SDTTGGADNNGATTDNTPTTPSQADPQGNATGNYNYYGQ
>Mature_439_residues
MNSESPRSNSSRFSRNRFNYTPDDNNNNGDNGQNKQNQRRKPRKKRPRRKKTIIVVSIIAVILAIFGVKKWYDAKNAVDS
IFDSAKIQKSRDVSATLKQSKPISILLLGTDTGALGRNYRGRTDTIIVATLNPKKKKMTLTSIPRDTVMSIPGYSNYSPS
KINAAYDLGGAGTAIKAVEKLLNIPIDYYGLINMGGLEKIVDGVGGIDITPKLTFKYGHADVTKGKKIHLNGKAALDYSR
MRYTDPNGDYGRQTRQRQVLMAILRKSDSITALLNQNFLNSLQKQTKTDLTFNELLALSTNYRVATHHLKSTHLQGNGTT
IDGGSYELVSKSERQRVTNFIRKALDLSAKETGTTGLSSIYTGEEDDTDTTNSDTNSSDTTSSSTEDYGTTSASSVETPA
SDTTGGADNNGATTDNTPTTPSQADPQGNATGNYNYYGQ

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 47962; Mature: 47962

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSESPRSNSSRFSRNRFNYTPDDNNNNGDNGQNKQNQRRKPRKKRPRRKKTIIVVSIIA
CCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHCCCHHHHHHHHHHHH
VILAIFGVKKWYDAKNAVDSIFDSAKIQKSRDVSATLKQSKPISILLLGTDTGALGRNYR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEEECCCCCCCCCCC
GRTDTIIVATLNPKKKKMTLTSIPRDTVMSIPGYSNYSPSKINAAYDLGGAGTAIKAVEK
CCCCEEEEEECCCCHHEEEECCCCCHHEEECCCCCCCCCCCCCEEEECCCCCHHHHHHHH
LLNIPIDYYGLINMGGLEKIVDGVGGIDITPKLTFKYGHADVTKGKKIHLNGKAALDYSR
HHHCCCCCEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCCEEEECCCCEECHHH
MRYTDPNGDYGRQTRQRQVLMAILRKSDSITALLNQNFLNSLQKQTKTDLTFNELLALST
EEECCCCCCHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHCC
NYRVATHHLKSTHLQGNGTTIDGGSYELVSKSERQRVTNFIRKALDLSAKETGTTGLSSI
CCEEEEEHHHHHEECCCCCEECCCCCHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
YTGEEDDTDTTNSDTNSSDTTSSSTEDYGTTSASSVETPASDTTGGADNNGATTDNTPTT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PSQADPQGNATGNYNYYGQ
CCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNSESPRSNSSRFSRNRFNYTPDDNNNNGDNGQNKQNQRRKPRKKRPRRKKTIIVVSIIA
CCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHCCCHHHHHHHHHHHH
VILAIFGVKKWYDAKNAVDSIFDSAKIQKSRDVSATLKQSKPISILLLGTDTGALGRNYR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEEECCCCCCCCCCC
GRTDTIIVATLNPKKKKMTLTSIPRDTVMSIPGYSNYSPSKINAAYDLGGAGTAIKAVEK
CCCCEEEEEECCCCHHEEEECCCCCHHEEECCCCCCCCCCCCCEEEECCCCCHHHHHHHH
LLNIPIDYYGLINMGGLEKIVDGVGGIDITPKLTFKYGHADVTKGKKIHLNGKAALDYSR
HHHCCCCCEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCCEEEECCCCEECHHH
MRYTDPNGDYGRQTRQRQVLMAILRKSDSITALLNQNFLNSLQKQTKTDLTFNELLALST
EEECCCCCCHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHCC
NYRVATHHLKSTHLQGNGTTIDGGSYELVSKSERQRVTNFIRKALDLSAKETGTTGLSSI
CCEEEEEHHHHHEECCCCCEECCCCCHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
YTGEEDDTDTTNSDTNSSDTTSSSTEDYGTTSASSVETPASDTTGGADNNGATTDNTPTT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PSQADPQGNATGNYNYYGQ
CCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12663927 [H]