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The map label for this gene is xynB [H]

Identifier: 116493178

GI number: 116493178

Start: 1414745

End: 1415542

Strand: Direct

Name: xynB [H]

Synonym: PEPE_1440

Alternate gene names: 116493178

Gene position: 1414745-1415542 (Clockwise)

Preceding gene: 116493173

Following gene: 116493179

Centisome position: 77.21

GC content: 41.23

Gene sequence:

>798_bases
ATGGAAATTGTTAAAACTAAACTTAATCATACTAATTCTAAATCAAAAGCCGAATTAATTTCATATATATCGCCCAATTT
AACTGATCAAAAAAGTCCATCTTTAATCTTTGTGCCCGGTGGATCCTACACCCACATCGATTTAGCTCAAGCTGAAAAAG
TTGCCTTACGTCTGGAATCATTTGGTTACCAAGTCTCCGTTCTAAGGTACTCCTTGGTTGATGAAGTTCAGCCACTTTAT
CCAGCTCCCTTAATCGAATTAGCCGAAGCAATGGATATTACGCATCAAAACGCTGAAAAATGGCAGGTTGACGTTAATCA
GATTATTTTAATGGGCTTCTCGGTTGGCGGTCATATCGTCAGCAATTTTAATAATAACTGGAATGCAGCCTGGCTTAGTT
CACAAACCCATTTAGCATCAACTACATTGCAGCCTTTTGCAACCATTTTAGGTTTTCCTGTAATTACTCCTAATGATGGT
TTTCCTGACGCTAAAACTTTAGCTAAATGGACCACCCATCCTCAACAATTAGCAGCTGATCAAAATGCCACTAAAGACAA
TGCCCCAACCTTCATTTGGGCAACGGCCGATGATCAGTTAGTTCCATCCCAAAATGCGGTTGATTACTTCTTAGCCCTTC
AAGCTCTGCAGGTTCCAACAGAACTTCATCTTTACCAACATGGCCCTCATGGGATGGCTCTAGCCGATGAAACTACCGCC
TATGATAACCATCACGTCGATCATCGGATTGCTACTTGGTTAACCACGGCGCTGGCCTGGTTGCATGAATTGAAATAA

Upstream 100 bases:

>100_bases
TTAAACTTCATTTCGTAGTTCCTTACCTTTTCTTTGGTGAATAACAGTAAAAAGATTAAAATGTAACCAAATATATAATT
CTCAAAAAGGAGTCAACATT

Downstream 100 bases:

>100_bases
GTTCGTTATTAATGTCGATATACCAATTTTTTGTGTACTATTTGTTAAACTTTCTTAAACAAAGTTATAGATAATCCATT
AATTTGGTATCATATTAATG

Product: esterase/lipase

Products: NA

Alternate protein names: Xylanase B; 1,4-beta-D-xylan xylanohydrolase B [H]

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MEIVKTKLNHTNSKSKAELISYISPNLTDQKSPSLIFVPGGSYTHIDLAQAEKVALRLESFGYQVSVLRYSLVDEVQPLY
PAPLIELAEAMDITHQNAEKWQVDVNQIILMGFSVGGHIVSNFNNNWNAAWLSSQTHLASTTLQPFATILGFPVITPNDG
FPDAKTLAKWTTHPQQLAADQNATKDNAPTFIWATADDQLVPSQNAVDYFLALQALQVPTELHLYQHGPHGMALADETTA
YDNHHVDHRIATWLTTALAWLHELK

Sequences:

>Translated_265_residues
MEIVKTKLNHTNSKSKAELISYISPNLTDQKSPSLIFVPGGSYTHIDLAQAEKVALRLESFGYQVSVLRYSLVDEVQPLY
PAPLIELAEAMDITHQNAEKWQVDVNQIILMGFSVGGHIVSNFNNNWNAAWLSSQTHLASTTLQPFATILGFPVITPNDG
FPDAKTLAKWTTHPQQLAADQNATKDNAPTFIWATADDQLVPSQNAVDYFLALQALQVPTELHLYQHGPHGMALADETTA
YDNHHVDHRIATWLTTALAWLHELK
>Mature_265_residues
MEIVKTKLNHTNSKSKAELISYISPNLTDQKSPSLIFVPGGSYTHIDLAQAEKVALRLESFGYQVSVLRYSLVDEVQPLY
PAPLIELAEAMDITHQNAEKWQVDVNQIILMGFSVGGHIVSNFNNNWNAAWLSSQTHLASTTLQPFATILGFPVITPNDG
FPDAKTLAKWTTHPQQLAADQNATKDNAPTFIWATADDQLVPSQNAVDYFLALQALQVPTELHLYQHGPHGMALADETTA
YDNHHVDHRIATWLTTALAWLHELK

Specific function: B.fibrisolvens is located in the rumen of ruminant animals, where it contributes to the animal's digestion of plant material by hydrolyzing hemicellulose with its xylanases [H]

COG id: COG0657

COG function: function code I; Esterase/lipase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 10 (cellulase F) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013094
- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF07859 Abhydrolase_3; PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 29445; Mature: 29445

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIVKTKLNHTNSKSKAELISYISPNLTDQKSPSLIFVPGGSYTHIDLAQAEKVALRLES
CCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEEEHHHHHHHHHHHHH
FGYQVSVLRYSLVDEVQPLYPAPLIELAEAMDITHQNAEKWQVDVNQIILMGFSVGGHIV
CCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHEEECCCEEEEEEECCCCCEE
SNFNNNWNAAWLSSQTHLASTTLQPFATILGFPVITPNDGFPDAKTLAKWTTHPQQLAAD
ECCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHCCCHHHHHCC
QNATKDNAPTFIWATADDQLVPSQNAVDYFLALQALQVPTELHLYQHGPHGMALADETTA
CCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCEECCCCCC
YDNHHVDHRIATWLTTALAWLHELK
CCCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEIVKTKLNHTNSKSKAELISYISPNLTDQKSPSLIFVPGGSYTHIDLAQAEKVALRLES
CCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEEEHHHHHHHHHHHHH
FGYQVSVLRYSLVDEVQPLYPAPLIELAEAMDITHQNAEKWQVDVNQIILMGFSVGGHIV
CCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHEEECCCEEEEEEECCCCCEE
SNFNNNWNAAWLSSQTHLASTTLQPFATILGFPVITPNDGFPDAKTLAKWTTHPQQLAAD
ECCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHCCCHHHHHCC
QNATKDNAPTFIWATADDQLVPSQNAVDYFLALQALQVPTELHLYQHGPHGMALADETTA
CCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCEECCCCCC
YDNHHVDHRIATWLTTALAWLHELK
CCCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1909424 [H]