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The map label for this gene is int [H]

Identifier: 116492801

GI number: 116492801

Start: 1029975

End: 1031048

Strand: Direct

Name: int [H]

Synonym: PEPE_1038

Alternate gene names: 116492801

Gene position: 1029975-1031048 (Clockwise)

Preceding gene: 116492800

Following gene: 116492803

Centisome position: 56.21

GC content: 34.54

Gene sequence:

>1074_bases
ATGGCATCATTTGAAAAAAGAGGTAAAAGAACTAGAGTTGTCGTATCCGTCATGCAGAGTGGCGTACGACGTAAGGTATC
TAAAACATTTGATACAAAGAAAAAAGCTAAGGATTGGGCAATTATGATGGAAGCTGATAAGCTTCAAAACAGAAGCATAA
TAGCTTCTAGTATGACATTTGCCGATTACTTCAAAATGTGGATGGAGACTTACAAGAAAAACGATATAAGACCGTCAACT
TATAATACTTATATTTCAACATTAAGACACATAAAAGAATCGTTTGATGGGATTACCCTTGAAAACTTAACGTATTCCCT
TCTACAATCTAGACTTGATACCATCGGTAAAACACTTTCTAAAGGCACTATGACTTTGATTGTGTCTAGAATTAAAGCTT
GCCTAAAAGATGCTCTTTACGACAAATATATTTTAGATGATATCTTCACACGGCTTAAACCACATGGTATAGAACGTAGC
AAAAAAACTAACGCTTTATCAGTTACAGAATTTGAAAAATTACAGGATTATTTATATCACTCTAAATTAGATAAAGCTAG
CCTTGCGATCCTTGTAGCATTAGAAACAGGAATGCGAATTGGAGAAGTGCTAGCCTTGCAGTACAAGGACGTCTCTATTC
CCTTTAACAACATTCATGTTAATAAATCACGTTCTGGGAATATCGTTGGCAAGCCTAAAAATAAAAATTCTGTGCGTGAT
ATAAAAATAACTAATGAGCTAGCTAATATAATCAGCAATGAAAAAAACAATAGTACAGAATTTATTTTTAATTGCAGACG
CCAAACAGTAAGAAATCGCCTCGATTCACTAATAAGCAAGTTAGATTTACAACCAATAACTATTCATGGGCTTAGACACT
CACACGCCTCTTATTTGCTTTATAAAGGTGTTTCAATTAACTACGTTTCGGCTAGACTTGGTCATGCAAATACAAGCATT
ACTCAAAAAGTTTACGCTCATATGCTCAAGGAAGAGAAGACCCGTGAACAAGATAAAACGATAGAAATATTGTCAGTGTC
CCCAAATGTCCCCAAAGCGATAAACAAATATTGA

Upstream 100 bases:

>100_bases
TGTGACCTAACCCTAAAAAACTACATTAAGTAGTCCTCTTTTATATTGTCTATTTTAGCATTGAGGGCTACTTCCGAAAA
GAGAACGGAGGTTCGCCATT

Downstream 100 bases:

>100_bases
TATAACGGCGTTCATAGTGGCTAGAATGTTTCAGTATTAAATGGCCAATTATTCCGCATTTCCCGTGTGGAGTTCCAATA
AAAGTAATAATAAAAACTAC

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 356

Protein sequence:

>357_residues
MASFEKRGKRTRVVVSVMQSGVRRKVSKTFDTKKKAKDWAIMMEADKLQNRSIIASSMTFADYFKMWMETYKKNDIRPST
YNTYISTLRHIKESFDGITLENLTYSLLQSRLDTIGKTLSKGTMTLIVSRIKACLKDALYDKYILDDIFTRLKPHGIERS
KKTNALSVTEFEKLQDYLYHSKLDKASLAILVALETGMRIGEVLALQYKDVSIPFNNIHVNKSRSGNIVGKPKNKNSVRD
IKITNELANIISNEKNNSTEFIFNCRRQTVRNRLDSLISKLDLQPITIHGLRHSHASYLLYKGVSINYVSARLGHANTSI
TQKVYAHMLKEEKTREQDKTIEILSVSPNVPKAINKY

Sequences:

>Translated_357_residues
MASFEKRGKRTRVVVSVMQSGVRRKVSKTFDTKKKAKDWAIMMEADKLQNRSIIASSMTFADYFKMWMETYKKNDIRPST
YNTYISTLRHIKESFDGITLENLTYSLLQSRLDTIGKTLSKGTMTLIVSRIKACLKDALYDKYILDDIFTRLKPHGIERS
KKTNALSVTEFEKLQDYLYHSKLDKASLAILVALETGMRIGEVLALQYKDVSIPFNNIHVNKSRSGNIVGKPKNKNSVRD
IKITNELANIISNEKNNSTEFIFNCRRQTVRNRLDSLISKLDLQPITIHGLRHSHASYLLYKGVSINYVSARLGHANTSI
TQKVYAHMLKEEKTREQDKTIEILSVSPNVPKAINKY
>Mature_356_residues
ASFEKRGKRTRVVVSVMQSGVRRKVSKTFDTKKKAKDWAIMMEADKLQNRSIIASSMTFADYFKMWMETYKKNDIRPSTY
NTYISTLRHIKESFDGITLENLTYSLLQSRLDTIGKTLSKGTMTLIVSRIKACLKDALYDKYILDDIFTRLKPHGIERSK
KTNALSVTEFEKLQDYLYHSKLDKASLAILVALETGMRIGEVLALQYKDVSIPFNNIHVNKSRSGNIVGKPKNKNSVRDI
KITNELANIISNEKNNSTEFIFNCRRQTVRNRLDSLISKLDLQPITIHGLRHSHASYLLYKGVSINYVSARLGHANTSIT
QKVYAHMLKEEKTREQDKTIEILSVSPNVPKAINKY

Specific function: Putative integrase that is involved in the insertion of the integrative and conjugative element ICEBs1. Required for the excision of ICEBs1 from the donor cell genome and subsequent integration in the recipient cell genome. Appears not to be transferred t

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 40927; Mature: 40796

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASFEKRGKRTRVVVSVMQSGVRRKVSKTFDTKKKAKDWAIMMEADKLQNRSIIASSMTF
CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEEEEHHHHCCCHHHHHHHHH
ADYFKMWMETYKKNDIRPSTYNTYISTLRHIKESFDGITLENLTYSLLQSRLDTIGKTLS
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
KGTMTLIVSRIKACLKDALYDKYILDDIFTRLKPHGIERSKKTNALSVTEFEKLQDYLYH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
SKLDKASLAILVALETGMRIGEVLALQYKDVSIPFNNIHVNKSRSGNIVGKPKNKNSVRD
HCCCHHHHEEEEEECCCCHHHHHHEEEEECEECCCCCEEECCCCCCCEEECCCCCCCCEE
IKITNELANIISNEKNNSTEFIFNCRRQTVRNRLDSLISKLDLQPITIHGLRHSHASYLL
EEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHCCCCEEE
YKGVSINYVSARLGHANTSITQKVYAHMLKEEKTREQDKTIEILSVSPNVPKAINKY
ECCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHCCC
>Mature Secondary Structure 
ASFEKRGKRTRVVVSVMQSGVRRKVSKTFDTKKKAKDWAIMMEADKLQNRSIIASSMTF
CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEEEEHHHHCCCHHHHHHHHH
ADYFKMWMETYKKNDIRPSTYNTYISTLRHIKESFDGITLENLTYSLLQSRLDTIGKTLS
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
KGTMTLIVSRIKACLKDALYDKYILDDIFTRLKPHGIERSKKTNALSVTEFEKLQDYLYH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
SKLDKASLAILVALETGMRIGEVLALQYKDVSIPFNNIHVNKSRSGNIVGKPKNKNSVRD
HCCCHHHHEEEEEECCCCHHHHHHEEEEECEECCCCCEEECCCCCCCEEECCCCCCCCEE
IKITNELANIISNEKNNSTEFIFNCRRQTVRNRLDSLISKLDLQPITIHGLRHSHASYLL
EEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHCCCCEEE
YKGVSINYVSARLGHANTSITQKVYAHMLKEEKTREQDKTIEILSVSPNVPKAINKY
ECCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]