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The map label for this gene is rimP

Identifier: 116492652

GI number: 116492652

Start: 888920

End: 889396

Strand: Direct

Name: rimP

Synonym: PEPE_0886

Alternate gene names: 116492652

Gene position: 888920-889396 (Clockwise)

Preceding gene: 116492651

Following gene: 116492653

Centisome position: 48.51

GC content: 34.8

Gene sequence:

>477_bases
TTGAGTAACAATGTTATTGAAAAGGTGACAGAATTAGTCCAACCAATTACTGATCGCCATAATTTTGAACTTGTTGAAGT
TGAATTTGTAAAAGAAGGTCAAGGTTGGTTCCTAAGAGTCTATATTGACAAAGTTGGTGGCATTAACATCGAAGAATGTG
CCATGGTCAGTGATGAGCTAAGTGAAATTTTGGACGCACAAGATCCAGATCCAATTCCACAAGCTTATTTCTTAGAAGTG
TCTTCTCCAGGGGCTGAACGACCTTTAAAAACGAAGGAAGATCTTACGAGATCAATTGGTGAATATATCCATATCTCACT
ATATGCATCGATTAATAAGCAAAAAGTTTTCGAAGGTTACCTTAAAAGCTTTGAAAATGATGAAATTGTTTTGGACTATT
TAGATAAGACTAGACATAAAGAACTTAAAGTAACGTATGATCAGGTTGCATTTGCTAGATTAGCAATCAAGATTTAG

Upstream 100 bases:

>100_bases
TATAATGGTATATTCAGAGTAGTAATTTGATACTCGTTAATTGAGTGAGCAGCGATGCTCGCTCTTTTTATTGGCAAAAT
ATAATTCTGGAGGTTCAAGT

Downstream 100 bases:

>100_bases
AGGAGAGTTTAAAATGAGTAAAGAAATGATTACCGCTCTTGATATCTTAGAAAAAGAAAAGGGAATCAAAAAAGAAGTTA
TCGTTGAAGCACTTGAAGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MSNNVIEKVTELVQPITDRHNFELVEVEFVKEGQGWFLRVYIDKVGGINIEECAMVSDELSEILDAQDPDPIPQAYFLEV
SSPGAERPLKTKEDLTRSIGEYIHISLYASINKQKVFEGYLKSFENDEIVLDYLDKTRHKELKVTYDQVAFARLAIKI

Sequences:

>Translated_158_residues
MSNNVIEKVTELVQPITDRHNFELVEVEFVKEGQGWFLRVYIDKVGGINIEECAMVSDELSEILDAQDPDPIPQAYFLEV
SSPGAERPLKTKEDLTRSIGEYIHISLYASINKQKVFEGYLKSFENDEIVLDYLDKTRHKELKVTYDQVAFARLAIKI
>Mature_157_residues
SNNVIEKVTELVQPITDRHNFELVEVEFVKEGQGWFLRVYIDKVGGINIEECAMVSDELSEILDAQDPDPIPQAYFLEVS
SPGAERPLKTKEDLTRSIGEYIHISLYASINKQKVFEGYLKSFENDEIVLDYLDKTRHKELKVTYDQVAFARLAIKI

Specific function: Required for maturation of 30S ribosomal subunits

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family

Homologues:

Organism=Escherichia coli, GI226510978, Length=125, Percent_Identity=39.2, Blast_Score=95, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMP_PEDPA (Q03FS7)

Other databases:

- EMBL:   CP000422
- RefSeq:   YP_804387.1
- ProteinModelPortal:   Q03FS7
- SMR:   Q03FS7
- STRING:   Q03FS7
- GeneID:   4417846
- GenomeReviews:   CP000422_GR
- KEGG:   ppe:PEPE_0886
- NMPDR:   fig|278197.10.peg.788
- eggNOG:   COG0779
- HOGENOM:   HBG668072
- OMA:   PYEKIAN
- PhylomeDB:   Q03FS7
- BioCyc:   PPEN278197:PEPE_0886-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01077
- InterPro:   IPR003728

Pfam domain/function: PF02576 DUF150

EC number: NA

Molecular weight: Translated: 18170; Mature: 18039

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNNVIEKVTELVQPITDRHNFELVEVEFVKEGQGWFLRVYIDKVGGINIEECAMVSDEL
CCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHH
SEILDAQDPDPIPQAYFLEVSSPGAERPLKTKEDLTRSIGEYIHISLYASINKQKVFEGY
HHHHCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHEEEEEEECCCHHHHHHHH
LKSFENDEIVLDYLDKTRHKELKVTYDQVAFARLAIKI
HHHCCCCCEEEEEHHCCCCCCEEEHHHHHHHHHHHCCC
>Mature Secondary Structure 
SNNVIEKVTELVQPITDRHNFELVEVEFVKEGQGWFLRVYIDKVGGINIEECAMVSDEL
CCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHH
SEILDAQDPDPIPQAYFLEVSSPGAERPLKTKEDLTRSIGEYIHISLYASINKQKVFEGY
HHHHCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHEEEEEEECCCHHHHHHHH
LKSFENDEIVLDYLDKTRHKELKVTYDQVAFARLAIKI
HHHCCCCCEEEEEHHCCCCCCEEEHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA