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The map label for this gene is rimM

Identifier: 116492615

GI number: 116492615

Start: 855722

End: 856237

Strand: Direct

Name: rimM

Synonym: PEPE_0848

Alternate gene names: 116492615

Gene position: 855722-856237 (Clockwise)

Preceding gene: 116492614

Following gene: 116492616

Centisome position: 46.7

GC content: 34.3

Gene sequence:

>516_bases
ATGAATTACTTTAATGTAGCAAAAATTGTCAATACCCGCGGTTTACGCGGTGAACTAAAAGTTATCTCATATACCGATTT
CCCAGAAGAGCGCTTTAAATCTGGTGCTGAACTACAAATTTTTAAGACTGAAAAAGACGAAGTTCCTGTTCAAACTGTAA
CGGTTAAAAACGCTAAAGAATATAAGGGCTCATTTATCGTTACTCTTGAAGGAATGAATTCCATTAACGATGTTGAAAAG
TTTAAAGGGATGATTTTGAAAGTTGAAGAAGATCAACTCCAAGATCTTGAAGAAGGAGAATTTTATCTTCATCAAATTAT
CGGATTAGATGTTATTGAGAATGACCAAAAAATTGGAACCATCAAAGAAGTTCTATCGTATGGTCCTAATGATGTTTGGG
TAGTTAAACGGCCCAATCAAAACGATTTGTTGCTTCCATATTTAAAAGATGTGATTTTAAATGTTGATTTGGAGCAAGGA
GCAGTTCAAGTTAGTGTTCCAGAGGGGTTAGATTAA

Upstream 100 bases:

>100_bases
ATCACGAAGCTAAGTATACAAAATAGGTCATACCTGAACGAAGGGCGTCGATAAAACATTAGTTTTATTACGGCCTTCTT
TTTGTATCGGAGGATAAAAG

Downstream 100 bases:

>100_bases
TGAAAATTGATGTTTTAACCTTATTTCCTAAAATGGTAGAAGTTCCATTGCATGAATCCATTGTTGGTAAAGCGATTGAA
GCCGGTAAGTTAAATGTTGA

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MNYFNVAKIVNTRGLRGELKVISYTDFPEERFKSGAELQIFKTEKDEVPVQTVTVKNAKEYKGSFIVTLEGMNSINDVEK
FKGMILKVEEDQLQDLEEGEFYLHQIIGLDVIENDQKIGTIKEVLSYGPNDVWVVKRPNQNDLLLPYLKDVILNVDLEQG
AVQVSVPEGLD

Sequences:

>Translated_171_residues
MNYFNVAKIVNTRGLRGELKVISYTDFPEERFKSGAELQIFKTEKDEVPVQTVTVKNAKEYKGSFIVTLEGMNSINDVEK
FKGMILKVEEDQLQDLEEGEFYLHQIIGLDVIENDQKIGTIKEVLSYGPNDVWVVKRPNQNDLLLPYLKDVILNVDLEQG
AVQVSVPEGLD
>Mature_171_residues
MNYFNVAKIVNTRGLRGELKVISYTDFPEERFKSGAELQIFKTEKDEVPVQTVTVKNAKEYKGSFIVTLEGMNSINDVEK
FKGMILKVEEDQLQDLEEGEFYLHQIIGLDVIENDQKIGTIKEVLSYGPNDVWVVKRPNQNDLLLPYLKDVILNVDLEQG
AVQVSVPEGLD

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_PEDPA (Q03FW4)

Other databases:

- EMBL:   CP000422
- RefSeq:   YP_804350.1
- ProteinModelPortal:   Q03FW4
- SMR:   Q03FW4
- STRING:   Q03FW4
- GeneID:   4417965
- GenomeReviews:   CP000422_GR
- KEGG:   ppe:PEPE_0848
- NMPDR:   fig|278197.10.peg.752
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   PDEFYDH
- BioCyc:   PPEN278197:PEPE_0848-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19451; Mature: 19451

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYFNVAKIVNTRGLRGELKVISYTDFPEERFKSGAELQIFKTEKDEVPVQTVTVKNAKE
CCCHHHHHHHHCCCCCCEEEEEEECCCCHHHHCCCCEEEEEECCCCCCCEEEEEECCCHH
YKGSFIVTLEGMNSINDVEKFKGMILKVEEDQLQDLEEGEFYLHQIIGLDVIENDQKIGT
HCCEEEEEECCCCCHHHHHHHCCEEEEECHHHHCCCCCCHHHHHHHHCCEEECCCCCCHH
IKEVLSYGPNDVWVVKRPNQNDLLLPYLKDVILNVDLEQGAVQVSVPEGLD
HHHHHHCCCCCEEEEECCCCCCEEHHHHHHHHEECCCCCCEEEEECCCCCC
>Mature Secondary Structure
MNYFNVAKIVNTRGLRGELKVISYTDFPEERFKSGAELQIFKTEKDEVPVQTVTVKNAKE
CCCHHHHHHHHCCCCCCEEEEEEECCCCHHHHCCCCEEEEEECCCCCCCEEEEEECCCHH
YKGSFIVTLEGMNSINDVEKFKGMILKVEEDQLQDLEEGEFYLHQIIGLDVIENDQKIGT
HCCEEEEEECCCCCHHHHHHHCCEEEEECHHHHCCCCCCHHHHHHHHCCEEECCCCCCHH
IKEVLSYGPNDVWVVKRPNQNDLLLPYLKDVILNVDLEQGAVQVSVPEGLD
HHHHHHCCCCCEEEEECCCCCCEEHHHHHHHHEECCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA