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The map label for this gene is rpoZ

Identifier: 116492593

GI number: 116492593

Start: 830870

End: 831079

Strand: Direct

Name: rpoZ

Synonym: PEPE_0826

Alternate gene names: 116492593

Gene position: 830870-831079 (Clockwise)

Preceding gene: 116492592

Following gene: 116492594

Centisome position: 45.34

GC content: 35.24

Gene sequence:

>210_bases
ATGATTTTATATCCTTCAGTAGATGATTTACTAGAACGTGTTGATTCCAGATATTCATTGATTATGCTTGCTAGCAAGCG
TGCACACCAATTGGATGAGGGTCAACCAGAATTACTAGATAAATACACTTCACAAAAAAATGTTGGCAAAGCTTTGGAAG
AAGTTGTTGCTGGCGATGTTATCATTGATCCAAACGAAAAAGATTTATAG

Upstream 100 bases:

>100_bases
GAAAATGCGGTTGAAGAAATTAAAAATATTATCAAGGGTGAACATCTTCGAGTAACCAGAGTTTATCCTGAATATCAAGA
AATGTTAGGAGAATTATAAG

Downstream 100 bases:

>100_bases
AAATTATGAAAGATGGTGGAGGTTGTCCTCTAGCATCTTTTTTGTTGGATTAATCAATTAGTGGGATTGGTATTCAAGGA
CTGGTAAAATAGCAGAAGGA

Product: DNA-directed RNA polymerase, subunit K/omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 69; Mature: 69

Protein sequence:

>69_residues
MILYPSVDDLLERVDSRYSLIMLASKRAHQLDEGQPELLDKYTSQKNVGKALEEVVAGDVIIDPNEKDL

Sequences:

>Translated_69_residues
MILYPSVDDLLERVDSRYSLIMLASKRAHQLDEGQPELLDKYTSQKNVGKALEEVVAGDVIIDPNEKDL
>Mature_69_residues
MILYPSVDDLLERVDSRYSLIMLASKRAHQLDEGQPELLDKYTSQKNVGKALEEVVAGDVIIDPNEKDL

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_PEDPA (Q03FY6)

Other databases:

- EMBL:   CP000422
- RefSeq:   YP_804328.1
- STRING:   Q03FY6
- GeneID:   4417978
- GenomeReviews:   CP000422_GR
- KEGG:   ppe:PEPE_0826
- NMPDR:   fig|278197.10.peg.730
- eggNOG:   COG1758
- HOGENOM:   HBG742204
- OMA:   SKYKLVT
- BioCyc:   PPEN278197:PEPE_0826-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 7787; Mature: 7787

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILYPSVDDLLERVDSRYSLIMLASKRAHQLDEGQPELLDKYTSQKNVGKALEEVVAGDV
CCCCCCHHHHHHHHCCHHHHHHHCCHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCE
IIDPNEKDL
EECCCCCCC
>Mature Secondary Structure
MILYPSVDDLLERVDSRYSLIMLASKRAHQLDEGQPELLDKYTSQKNVGKALEEVVAGDV
CCCCCCHHHHHHHHCCHHHHHHHCCHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCE
IIDPNEKDL
EECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA