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The map label for this gene is nusB

Identifier: 116492583

GI number: 116492583

Start: 822723

End: 823124

Strand: Direct

Name: nusB

Synonym: PEPE_0816

Alternate gene names: 116492583

Gene position: 822723-823124 (Clockwise)

Preceding gene: 116492582

Following gene: 116492584

Centisome position: 44.9

GC content: 34.83

Gene sequence:

>402_bases
GTGAGTTTAAATCGACATCAAATTCGAGAGAGCGCCTTTAAGATTATCTTTGCTAAAAGTGCTAATCCAGACGCTGATCT
AAGCGAATTGCAAGATCAAGTTTTAGAAGAATTTCATGAGACAGAAGCTCCCGATCAATTCTTAAAAGATTTGGTTATGG
GAGTTAGCTTAAATCTTGAAGCTATTAATGAAACGATTAGTGGAGAGTTGAAAAAGGGATGGACAGTAAAACGTTTAGAA
AGTCCTGACCGCGTTATATTACAGATGGGTACTTATGAAATTAAGTACACTGAAACACCAGATAAAGTTGCGATTAATGA
AGCTTTGGAGTTAGCTAAGAAGTATACTGATGAAGATGCTCGTAAATTTATCAATGGAGTTTTATCTAATATCGCAAAAT
AA

Upstream 100 bases:

>100_bases
TTAATGAAGTTAACGTGCAAGTCAACGGAATGATGCCAGATACGACGACATCTGATATTGATCCCGATGATATTTTTTCA
GAAAATAATGGTGATAAATA

Downstream 100 bases:

>100_bases
TTAAAAAATGGTTGTGAATATCACTTGATATTTACAACCATTTTTAATTTGTTTAAGATTTAAAAAGAAAATGCATCTTA
TGATATGATTTAAGATGGAT

Product: NusB antitermination factor

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 133; Mature: 132

Protein sequence:

>133_residues
MSLNRHQIRESAFKIIFAKSANPDADLSELQDQVLEEFHETEAPDQFLKDLVMGVSLNLEAINETISGELKKGWTVKRLE
SPDRVILQMGTYEIKYTETPDKVAINEALELAKKYTDEDARKFINGVLSNIAK

Sequences:

>Translated_133_residues
MSLNRHQIRESAFKIIFAKSANPDADLSELQDQVLEEFHETEAPDQFLKDLVMGVSLNLEAINETISGELKKGWTVKRLE
SPDRVILQMGTYEIKYTETPDKVAINEALELAKKYTDEDARKFINGVLSNIAK
>Mature_132_residues
SLNRHQIRESAFKIIFAKSANPDADLSELQDQVLEEFHETEAPDQFLKDLVMGVSLNLEAINETISGELKKGWTVKRLES
PDRVILQMGTYEIKYTETPDKVAINEALELAKKYTDEDARKFINGVLSNIAK

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

None

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_PEDPA (Q03FZ6)

Other databases:

- EMBL:   CP000422
- RefSeq:   YP_804318.1
- ProteinModelPortal:   Q03FZ6
- SMR:   Q03FZ6
- STRING:   Q03FZ6
- GeneID:   4418002
- GenomeReviews:   CP000422_GR
- KEGG:   ppe:PEPE_0816
- NMPDR:   fig|278197.10.peg.721
- eggNOG:   COG0781
- HOGENOM:   HBG734409
- OMA:   IENEAHE
- PhylomeDB:   Q03FZ6
- BioCyc:   PPEN278197:PEPE_0816-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 15098; Mature: 14967

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLNRHQIRESAFKIIFAKSANPDADLSELQDQVLEEFHETEAPDQFLKDLVMGVSLNLE
CCCCHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHH
AINETISGELKKGWTVKRLESPDRVILQMGTYEIKYTETPDKVAINEALELAKKYTDEDA
HHHHHHCCHHHCCCCHHHCCCCCCEEEEECCEEEEECCCCCHHHHHHHHHHHHHCCCHHH
RKFINGVLSNIAK
HHHHHHHHHHHCC
>Mature Secondary Structure 
SLNRHQIRESAFKIIFAKSANPDADLSELQDQVLEEFHETEAPDQFLKDLVMGVSLNLE
CCCHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHH
AINETISGELKKGWTVKRLESPDRVILQMGTYEIKYTETPDKVAINEALELAKKYTDEDA
HHHHHHCCHHHCCCCHHHCCCCCCEEEEECCEEEEECCCCCHHHHHHHHHHHHHCCCHHH
RKFINGVLSNIAK
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA