Definition Pediococcus pentosaceus ATCC 25745, complete genome.
Accession NC_008525
Length 1,832,387

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The map label for this gene is 116492551

Identifier: 116492551

GI number: 116492551

Start: 798075

End: 799478

Strand: Direct

Name: 116492551

Synonym: PEPE_0783

Alternate gene names: NA

Gene position: 798075-799478 (Clockwise)

Preceding gene: 116492550

Following gene: 116492552

Centisome position: 43.55

GC content: 38.46

Gene sequence:

>1404_bases
ATGATAATCGATATTACAGTTATGGGAAAAGGCTCAATTATTAATGGAACAACGTTTGTATTCCCAAAGGATGCAGATTT
AACAGCTGATGAGATTAGGAGCTTTATTTCTGCAAACGATGAATTTGCCAAGGAATACGATAAAAAGTGGCAAATGTATA
TTGGAAACCATGCGATCCTCCATAAGAATGCAAAGGACCACGGGCCAGATAATAAATTAGTTAACAATTTGGCGCATTAC
ATTGTGGAGACGTTTAACGGTTACTTCATGGGTATTCCACCTAAAATCACGTTAGATGATGACACCGACAATGAGAAGCT
TCAACAATGGAATGATACTAATTCATTCCAAGATAAATTGAATGAGATTAGCAAGCAAGCGGATGTCTACGGACGTTCGA
TTGCTTTTTTATTTCAAAATGAAAATAGTGAGACAGGCGTAGCTTATAGTTCACCGATGAATTCATTCATTATTTATGAT
GATAGTGTCCTTCATGAACCGTTAGCATTTGTTAGATATACACGAGACAAGAACAACATTTTATCTGGTCAGGTATATAC
AGATAACGAGTGGTATTCATTTGATGATAGTGCTAATAGAGCTGGCGAAGTTAATGCTAATCAATTCGGACAAGTACCAG
CAGTAGAGTTCTTTGATAATGAAGAGCGACAAGGTGTGTTTGAGAATGCTATGACCTTGATTGATGCGCTTAACAACGTA
GTAAGTCAAAAAGCTAATCAAGTCGAGTATTTCGATAATGGATATCTATCCATGCTAGGGCTTAATTTAGATGAAGATAA
CGATGGCAAGCCTGAATTGAATCTTGATGGAAACCAGATCATCTATTCACCCGATGCAGATGCCACTAATGCAAAGGTAG
AATTTTTAGCTAAGCCAGATGGCGATAACATGCAAGAACATTTGACTGACCGATTGATCAATACAATCTATCAAGTTTGT
ATGGTTGCTAATCTAAATGATGAATCATTCAGTGGAAACAGTTCTGGCGTGGCTCTTCAATACAAGTTATTGCCTATGAA
GAACATGGCAGCTAACAAGGAACGCAAGTTTACTCAAGCGTTGCGAAAGCTTTACAAGATTGCTTTTGGTGTTGAGACTA
TTCTGGACACGACTAAAACGGAAGCATGGCAAGACTTGAAGTTTCAGTTCACTCGCAACCTCCCAGTTAACTTAGCAGAC
GAAGCCTCAACAGCTAAGGATCTTGTTGGTTTAGTTAGCCAAGAAACACTGTTGTCTACATTGTCATTTGTGGACGATGC
TAAGAACGAGATTAAACGCATGAAAGAGGAGCAAAAGGAACAAATTAAAAGTTCACTTGAAGCCACTGACAACCTAACTG
ACCAACAGAAAGCTGGTGTAGGCAATGGTAAAGCGGAAGAATAG

Upstream 100 bases:

>100_bases
CATGACCATGCTATGGATTCAATGCGTTACTTTGTCTACATGGTACTAAGACACAATAACAAAGCTAAAGTTATCAAAAA
TAAATACTTTTAAAGGGGTG

Downstream 100 bases:

>100_bases
TGATGATTATTGGAAACAACGTGAAGCCGATGAACGGAAGTGGATTGAATCTAATATCAAGAGCGGCAAAGACTTTGATA
GATTAATTCAAGAGCATTAT

Product: Phage portal protein, SPP1 Gp6-like

Products: NA

Alternate protein names: Portal Protein; SPP1 Family Phage Portal Protein; Phage Portal Protein SPP1 Gp6-Like; Phage Portal Protein SPP1 Family; Phage Protein; Prophage Lp1 Protein; Phage Related Protein; Phage-Related Portal Protein; Phage-Like Protein; Bacteriophage Portal Protein

Number of amino acids: Translated: 467; Mature: 467

Protein sequence:

>467_residues
MIIDITVMGKGSIINGTTFVFPKDADLTADEIRSFISANDEFAKEYDKKWQMYIGNHAILHKNAKDHGPDNKLVNNLAHY
IVETFNGYFMGIPPKITLDDDTDNEKLQQWNDTNSFQDKLNEISKQADVYGRSIAFLFQNENSETGVAYSSPMNSFIIYD
DSVLHEPLAFVRYTRDKNNILSGQVYTDNEWYSFDDSANRAGEVNANQFGQVPAVEFFDNEERQGVFENAMTLIDALNNV
VSQKANQVEYFDNGYLSMLGLNLDEDNDGKPELNLDGNQIIYSPDADATNAKVEFLAKPDGDNMQEHLTDRLINTIYQVC
MVANLNDESFSGNSSGVALQYKLLPMKNMAANKERKFTQALRKLYKIAFGVETILDTTKTEAWQDLKFQFTRNLPVNLAD
EASTAKDLVGLVSQETLLSTLSFVDDAKNEIKRMKEEQKEQIKSSLEATDNLTDQQKAGVGNGKAEE

Sequences:

>Translated_467_residues
MIIDITVMGKGSIINGTTFVFPKDADLTADEIRSFISANDEFAKEYDKKWQMYIGNHAILHKNAKDHGPDNKLVNNLAHY
IVETFNGYFMGIPPKITLDDDTDNEKLQQWNDTNSFQDKLNEISKQADVYGRSIAFLFQNENSETGVAYSSPMNSFIIYD
DSVLHEPLAFVRYTRDKNNILSGQVYTDNEWYSFDDSANRAGEVNANQFGQVPAVEFFDNEERQGVFENAMTLIDALNNV
VSQKANQVEYFDNGYLSMLGLNLDEDNDGKPELNLDGNQIIYSPDADATNAKVEFLAKPDGDNMQEHLTDRLINTIYQVC
MVANLNDESFSGNSSGVALQYKLLPMKNMAANKERKFTQALRKLYKIAFGVETILDTTKTEAWQDLKFQFTRNLPVNLAD
EASTAKDLVGLVSQETLLSTLSFVDDAKNEIKRMKEEQKEQIKSSLEATDNLTDQQKAGVGNGKAEE
>Mature_467_residues
MIIDITVMGKGSIINGTTFVFPKDADLTADEIRSFISANDEFAKEYDKKWQMYIGNHAILHKNAKDHGPDNKLVNNLAHY
IVETFNGYFMGIPPKITLDDDTDNEKLQQWNDTNSFQDKLNEISKQADVYGRSIAFLFQNENSETGVAYSSPMNSFIIYD
DSVLHEPLAFVRYTRDKNNILSGQVYTDNEWYSFDDSANRAGEVNANQFGQVPAVEFFDNEERQGVFENAMTLIDALNNV
VSQKANQVEYFDNGYLSMLGLNLDEDNDGKPELNLDGNQIIYSPDADATNAKVEFLAKPDGDNMQEHLTDRLINTIYQVC
MVANLNDESFSGNSSGVALQYKLLPMKNMAANKERKFTQALRKLYKIAFGVETILDTTKTEAWQDLKFQFTRNLPVNLAD
EASTAKDLVGLVSQETLLSTLSFVDDAKNEIKRMKEEQKEQIKSSLEATDNLTDQQKAGVGNGKAEE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52608; Mature: 52608

Theoretical pI: Translated: 4.30; Mature: 4.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIDITVMGKGSIINGTTFVFPKDADLTADEIRSFISANDEFAKEYDKKWQMYIGNHAIL
CEEEEEEECCCCEECCEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHCEEEEECCEEEE
HKNAKDHGPDNKLVNNLAHYIVETFNGYFMGIPPKITLDDDTDNEKLQQWNDTNSFQDKL
ECCCCCCCCCHHHHHHHHHHHHHHHCCEEEECCCEEEECCCCCHHHHHHCCCCCHHHHHH
NEISKQADVYGRSIAFLFQNENSETGVAYSSPMNSFIIYDDSVLHEPLAFVRYTRDKNNI
HHHHHHHHHCCCEEEEEEECCCCCCCEEECCCCCCEEEECCHHHHHHHHHHHEECCCCCE
LSGQVYTDNEWYSFDDSANRAGEVNANQFGQVPAVEFFDNEERQGVFENAMTLIDALNNV
ECCEEEECCCCEECCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
VSQKANQVEYFDNGYLSMLGLNLDEDNDGKPELNLDGNQIIYSPDADATNAKVEFLAKPD
HHHCCCCEECCCCCEEEEEECCCCCCCCCCCEEECCCCEEEECCCCCCCCCEEEEEECCC
GDNMQEHLTDRLINTIYQVCMVANLNDESFSGNSSGVALQYKLLPMKNMAANKERKFTQA
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCHHHHCCHHHHHHHH
LRKLYKIAFGVETILDTTKTEAWQDLKFQFTRNLPVNLADEASTAKDLVGLVSQETLLST
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LSFVDDAKNEIKRMKEEQKEQIKSSLEATDNLTDQQKAGVGNGKAEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCC
>Mature Secondary Structure
MIIDITVMGKGSIINGTTFVFPKDADLTADEIRSFISANDEFAKEYDKKWQMYIGNHAIL
CEEEEEEECCCCEECCEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHCEEEEECCEEEE
HKNAKDHGPDNKLVNNLAHYIVETFNGYFMGIPPKITLDDDTDNEKLQQWNDTNSFQDKL
ECCCCCCCCCHHHHHHHHHHHHHHHCCEEEECCCEEEECCCCCHHHHHHCCCCCHHHHHH
NEISKQADVYGRSIAFLFQNENSETGVAYSSPMNSFIIYDDSVLHEPLAFVRYTRDKNNI
HHHHHHHHHCCCEEEEEEECCCCCCCEEECCCCCCEEEECCHHHHHHHHHHHEECCCCCE
LSGQVYTDNEWYSFDDSANRAGEVNANQFGQVPAVEFFDNEERQGVFENAMTLIDALNNV
ECCEEEECCCCEECCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
VSQKANQVEYFDNGYLSMLGLNLDEDNDGKPELNLDGNQIIYSPDADATNAKVEFLAKPD
HHHCCCCEECCCCCEEEEEECCCCCCCCCCCEEECCCCEEEECCCCCCCCCEEEEEECCC
GDNMQEHLTDRLINTIYQVCMVANLNDESFSGNSSGVALQYKLLPMKNMAANKERKFTQA
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCHHHHCCHHHHHHHH
LRKLYKIAFGVETILDTTKTEAWQDLKFQFTRNLPVNLADEASTAKDLVGLVSQETLLST
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LSFVDDAKNEIKRMKEEQKEQIKSSLEATDNLTDQQKAGVGNGKAEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA