| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is 116492551
Identifier: 116492551
GI number: 116492551
Start: 798075
End: 799478
Strand: Direct
Name: 116492551
Synonym: PEPE_0783
Alternate gene names: NA
Gene position: 798075-799478 (Clockwise)
Preceding gene: 116492550
Following gene: 116492552
Centisome position: 43.55
GC content: 38.46
Gene sequence:
>1404_bases ATGATAATCGATATTACAGTTATGGGAAAAGGCTCAATTATTAATGGAACAACGTTTGTATTCCCAAAGGATGCAGATTT AACAGCTGATGAGATTAGGAGCTTTATTTCTGCAAACGATGAATTTGCCAAGGAATACGATAAAAAGTGGCAAATGTATA TTGGAAACCATGCGATCCTCCATAAGAATGCAAAGGACCACGGGCCAGATAATAAATTAGTTAACAATTTGGCGCATTAC ATTGTGGAGACGTTTAACGGTTACTTCATGGGTATTCCACCTAAAATCACGTTAGATGATGACACCGACAATGAGAAGCT TCAACAATGGAATGATACTAATTCATTCCAAGATAAATTGAATGAGATTAGCAAGCAAGCGGATGTCTACGGACGTTCGA TTGCTTTTTTATTTCAAAATGAAAATAGTGAGACAGGCGTAGCTTATAGTTCACCGATGAATTCATTCATTATTTATGAT GATAGTGTCCTTCATGAACCGTTAGCATTTGTTAGATATACACGAGACAAGAACAACATTTTATCTGGTCAGGTATATAC AGATAACGAGTGGTATTCATTTGATGATAGTGCTAATAGAGCTGGCGAAGTTAATGCTAATCAATTCGGACAAGTACCAG CAGTAGAGTTCTTTGATAATGAAGAGCGACAAGGTGTGTTTGAGAATGCTATGACCTTGATTGATGCGCTTAACAACGTA GTAAGTCAAAAAGCTAATCAAGTCGAGTATTTCGATAATGGATATCTATCCATGCTAGGGCTTAATTTAGATGAAGATAA CGATGGCAAGCCTGAATTGAATCTTGATGGAAACCAGATCATCTATTCACCCGATGCAGATGCCACTAATGCAAAGGTAG AATTTTTAGCTAAGCCAGATGGCGATAACATGCAAGAACATTTGACTGACCGATTGATCAATACAATCTATCAAGTTTGT ATGGTTGCTAATCTAAATGATGAATCATTCAGTGGAAACAGTTCTGGCGTGGCTCTTCAATACAAGTTATTGCCTATGAA GAACATGGCAGCTAACAAGGAACGCAAGTTTACTCAAGCGTTGCGAAAGCTTTACAAGATTGCTTTTGGTGTTGAGACTA TTCTGGACACGACTAAAACGGAAGCATGGCAAGACTTGAAGTTTCAGTTCACTCGCAACCTCCCAGTTAACTTAGCAGAC GAAGCCTCAACAGCTAAGGATCTTGTTGGTTTAGTTAGCCAAGAAACACTGTTGTCTACATTGTCATTTGTGGACGATGC TAAGAACGAGATTAAACGCATGAAAGAGGAGCAAAAGGAACAAATTAAAAGTTCACTTGAAGCCACTGACAACCTAACTG ACCAACAGAAAGCTGGTGTAGGCAATGGTAAAGCGGAAGAATAG
Upstream 100 bases:
>100_bases CATGACCATGCTATGGATTCAATGCGTTACTTTGTCTACATGGTACTAAGACACAATAACAAAGCTAAAGTTATCAAAAA TAAATACTTTTAAAGGGGTG
Downstream 100 bases:
>100_bases TGATGATTATTGGAAACAACGTGAAGCCGATGAACGGAAGTGGATTGAATCTAATATCAAGAGCGGCAAAGACTTTGATA GATTAATTCAAGAGCATTAT
Product: Phage portal protein, SPP1 Gp6-like
Products: NA
Alternate protein names: Portal Protein; SPP1 Family Phage Portal Protein; Phage Portal Protein SPP1 Gp6-Like; Phage Portal Protein SPP1 Family; Phage Protein; Prophage Lp1 Protein; Phage Related Protein; Phage-Related Portal Protein; Phage-Like Protein; Bacteriophage Portal Protein
Number of amino acids: Translated: 467; Mature: 467
Protein sequence:
>467_residues MIIDITVMGKGSIINGTTFVFPKDADLTADEIRSFISANDEFAKEYDKKWQMYIGNHAILHKNAKDHGPDNKLVNNLAHY IVETFNGYFMGIPPKITLDDDTDNEKLQQWNDTNSFQDKLNEISKQADVYGRSIAFLFQNENSETGVAYSSPMNSFIIYD DSVLHEPLAFVRYTRDKNNILSGQVYTDNEWYSFDDSANRAGEVNANQFGQVPAVEFFDNEERQGVFENAMTLIDALNNV VSQKANQVEYFDNGYLSMLGLNLDEDNDGKPELNLDGNQIIYSPDADATNAKVEFLAKPDGDNMQEHLTDRLINTIYQVC MVANLNDESFSGNSSGVALQYKLLPMKNMAANKERKFTQALRKLYKIAFGVETILDTTKTEAWQDLKFQFTRNLPVNLAD EASTAKDLVGLVSQETLLSTLSFVDDAKNEIKRMKEEQKEQIKSSLEATDNLTDQQKAGVGNGKAEE
Sequences:
>Translated_467_residues MIIDITVMGKGSIINGTTFVFPKDADLTADEIRSFISANDEFAKEYDKKWQMYIGNHAILHKNAKDHGPDNKLVNNLAHY IVETFNGYFMGIPPKITLDDDTDNEKLQQWNDTNSFQDKLNEISKQADVYGRSIAFLFQNENSETGVAYSSPMNSFIIYD DSVLHEPLAFVRYTRDKNNILSGQVYTDNEWYSFDDSANRAGEVNANQFGQVPAVEFFDNEERQGVFENAMTLIDALNNV VSQKANQVEYFDNGYLSMLGLNLDEDNDGKPELNLDGNQIIYSPDADATNAKVEFLAKPDGDNMQEHLTDRLINTIYQVC MVANLNDESFSGNSSGVALQYKLLPMKNMAANKERKFTQALRKLYKIAFGVETILDTTKTEAWQDLKFQFTRNLPVNLAD EASTAKDLVGLVSQETLLSTLSFVDDAKNEIKRMKEEQKEQIKSSLEATDNLTDQQKAGVGNGKAEE >Mature_467_residues MIIDITVMGKGSIINGTTFVFPKDADLTADEIRSFISANDEFAKEYDKKWQMYIGNHAILHKNAKDHGPDNKLVNNLAHY IVETFNGYFMGIPPKITLDDDTDNEKLQQWNDTNSFQDKLNEISKQADVYGRSIAFLFQNENSETGVAYSSPMNSFIIYD DSVLHEPLAFVRYTRDKNNILSGQVYTDNEWYSFDDSANRAGEVNANQFGQVPAVEFFDNEERQGVFENAMTLIDALNNV VSQKANQVEYFDNGYLSMLGLNLDEDNDGKPELNLDGNQIIYSPDADATNAKVEFLAKPDGDNMQEHLTDRLINTIYQVC MVANLNDESFSGNSSGVALQYKLLPMKNMAANKERKFTQALRKLYKIAFGVETILDTTKTEAWQDLKFQFTRNLPVNLAD EASTAKDLVGLVSQETLLSTLSFVDDAKNEIKRMKEEQKEQIKSSLEATDNLTDQQKAGVGNGKAEE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52608; Mature: 52608
Theoretical pI: Translated: 4.30; Mature: 4.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIIDITVMGKGSIINGTTFVFPKDADLTADEIRSFISANDEFAKEYDKKWQMYIGNHAIL CEEEEEEECCCCEECCEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHCEEEEECCEEEE HKNAKDHGPDNKLVNNLAHYIVETFNGYFMGIPPKITLDDDTDNEKLQQWNDTNSFQDKL ECCCCCCCCCHHHHHHHHHHHHHHHCCEEEECCCEEEECCCCCHHHHHHCCCCCHHHHHH NEISKQADVYGRSIAFLFQNENSETGVAYSSPMNSFIIYDDSVLHEPLAFVRYTRDKNNI HHHHHHHHHCCCEEEEEEECCCCCCCEEECCCCCCEEEECCHHHHHHHHHHHEECCCCCE LSGQVYTDNEWYSFDDSANRAGEVNANQFGQVPAVEFFDNEERQGVFENAMTLIDALNNV ECCEEEECCCCEECCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH VSQKANQVEYFDNGYLSMLGLNLDEDNDGKPELNLDGNQIIYSPDADATNAKVEFLAKPD HHHCCCCEECCCCCEEEEEECCCCCCCCCCCEEECCCCEEEECCCCCCCCCEEEEEECCC GDNMQEHLTDRLINTIYQVCMVANLNDESFSGNSSGVALQYKLLPMKNMAANKERKFTQA CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCHHHHCCHHHHHHHH LRKLYKIAFGVETILDTTKTEAWQDLKFQFTRNLPVNLADEASTAKDLVGLVSQETLLST HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH LSFVDDAKNEIKRMKEEQKEQIKSSLEATDNLTDQQKAGVGNGKAEE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCC >Mature Secondary Structure MIIDITVMGKGSIINGTTFVFPKDADLTADEIRSFISANDEFAKEYDKKWQMYIGNHAIL CEEEEEEECCCCEECCEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHCEEEEECCEEEE HKNAKDHGPDNKLVNNLAHYIVETFNGYFMGIPPKITLDDDTDNEKLQQWNDTNSFQDKL ECCCCCCCCCHHHHHHHHHHHHHHHCCEEEECCCEEEECCCCCHHHHHHCCCCCHHHHHH NEISKQADVYGRSIAFLFQNENSETGVAYSSPMNSFIIYDDSVLHEPLAFVRYTRDKNNI HHHHHHHHHCCCEEEEEEECCCCCCCEEECCCCCCEEEECCHHHHHHHHHHHEECCCCCE LSGQVYTDNEWYSFDDSANRAGEVNANQFGQVPAVEFFDNEERQGVFENAMTLIDALNNV ECCEEEECCCCEECCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH VSQKANQVEYFDNGYLSMLGLNLDEDNDGKPELNLDGNQIIYSPDADATNAKVEFLAKPD HHHCCCCEECCCCCEEEEEECCCCCCCCCCCEEECCCCEEEECCCCCCCCCEEEEEECCC GDNMQEHLTDRLINTIYQVCMVANLNDESFSGNSSGVALQYKLLPMKNMAANKERKFTQA CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCHHHHCCHHHHHHHH LRKLYKIAFGVETILDTTKTEAWQDLKFQFTRNLPVNLADEASTAKDLVGLVSQETLLST HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH LSFVDDAKNEIKRMKEEQKEQIKSSLEATDNLTDQQKAGVGNGKAEE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA