| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is 116492509
Identifier: 116492509
GI number: 116492509
Start: 778119
End: 779036
Strand: Direct
Name: 116492509
Synonym: PEPE_0741
Alternate gene names: NA
Gene position: 778119-779036 (Clockwise)
Preceding gene: 116492508
Following gene: 116492510
Centisome position: 42.46
GC content: 30.94
Gene sequence:
>918_bases ATGGATAACACAATCAATGAAGATAAAAAAAGAGCAACATTATCCGACAAGTTGCTGAAAGTACAATCTGATTTGGATGC TGGATTAAGCAAAGGTCGTAGTTTCGCAGAATTATTTCGTACTTTAACAACTACAGATGATAATGTCGAGTTATTGGATG CTGCAAAAAAACTTTATGCGTTCGTAGTTGATAGCGATGCAGTTATTTTTCCTCAGAAATTTGAAGCTAGTGACTATTAT TTAATTTTTATGACTCGCTTAATTGAATTAAGCGGTTTAAAAACTAAACTGGGTCTGGAAGTTGAACAAGAAAATAATTA CCAAAAACTTTTCCATACTTGGACGGGGACTAGCCAAAAGTTCCGTTTTAAAATGGCAAATAATCAGGCTGAATATGTTG ATCAGGCAACGCAACAAACTATTTTTCATTTGAGTTTAGATGAACGGAAAATGAGCTTTAATACTGATACAATTAATAAT TTTTATTTTCTAAATCAGCAAGATGACGAAGATAGCTTGGTTGACGAGATTAAGTTATTTACTAAATTTGGCCAAATTTT AGAAGAAGTATACAATTTTGAAGTTGACTTTAATATGTTTGATGCTCGTAATAATAAAGTTTATGAGTTTGATCAAACTA GCTTAAATACAGATATTATTGATGAACTTTTTGTGGATGCTGCTAAAAATGGTTTTACTTTGCTAAATGCTGAGAAACTA TTGGGAGCATACCTAAAATTAGATAATCATGTAGTTTTCTCGATTTTTCAAGAGATACCAGCAACCGACCAATGGGCTAT TCAAGTTAATGATAAAAGTGAAGAAAAATCATTGTTTGATATCTTGAAGCAGTACGATTTCTTGAACGATTGGTATGTTA GAAATATTGCAGATTTAAAATTAAAAATGTTATTTTAG
Upstream 100 bases:
>100_bases AAGAAGAGTTTCACGAGTTATAGTGAGTTCCGTGAAACTGCCGACCAACTGTATAAAAATTATCTCAGTAGCCTATTAGA CGAAGGGCAGGTAAAGTCTA
Downstream 100 bases:
>100_bases GTGATTAAGATGGATTGGGCAAAAATGTTGCAAACATCGGTTGCGTTAGACCGTGATATTAGATTTAAACATAACTTGGC CAATAGTATGCAAGACCGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 305; Mature: 305
Protein sequence:
>305_residues MDNTINEDKKRATLSDKLLKVQSDLDAGLSKGRSFAELFRTLTTTDDNVELLDAAKKLYAFVVDSDAVIFPQKFEASDYY LIFMTRLIELSGLKTKLGLEVEQENNYQKLFHTWTGTSQKFRFKMANNQAEYVDQATQQTIFHLSLDERKMSFNTDTINN FYFLNQQDDEDSLVDEIKLFTKFGQILEEVYNFEVDFNMFDARNNKVYEFDQTSLNTDIIDELFVDAAKNGFTLLNAEKL LGAYLKLDNHVVFSIFQEIPATDQWAIQVNDKSEEKSLFDILKQYDFLNDWYVRNIADLKLKMLF
Sequences:
>Translated_305_residues MDNTINEDKKRATLSDKLLKVQSDLDAGLSKGRSFAELFRTLTTTDDNVELLDAAKKLYAFVVDSDAVIFPQKFEASDYY LIFMTRLIELSGLKTKLGLEVEQENNYQKLFHTWTGTSQKFRFKMANNQAEYVDQATQQTIFHLSLDERKMSFNTDTINN FYFLNQQDDEDSLVDEIKLFTKFGQILEEVYNFEVDFNMFDARNNKVYEFDQTSLNTDIIDELFVDAAKNGFTLLNAEKL LGAYLKLDNHVVFSIFQEIPATDQWAIQVNDKSEEKSLFDILKQYDFLNDWYVRNIADLKLKMLF >Mature_305_residues MDNTINEDKKRATLSDKLLKVQSDLDAGLSKGRSFAELFRTLTTTDDNVELLDAAKKLYAFVVDSDAVIFPQKFEASDYY LIFMTRLIELSGLKTKLGLEVEQENNYQKLFHTWTGTSQKFRFKMANNQAEYVDQATQQTIFHLSLDERKMSFNTDTINN FYFLNQQDDEDSLVDEIKLFTKFGQILEEVYNFEVDFNMFDARNNKVYEFDQTSLNTDIIDELFVDAAKNGFTLLNAEKL LGAYLKLDNHVVFSIFQEIPATDQWAIQVNDKSEEKSLFDILKQYDFLNDWYVRNIADLKLKMLF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35618; Mature: 35618
Theoretical pI: Translated: 4.34; Mature: 4.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDNTINEDKKRATLSDKLLKVQSDLDAGLSKGRSFAELFRTLTTTDDNVELLDAAKKLYA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHEE FVVDSDAVIFPQKFEASDYYLIFMTRLIELSGLKTKLGLEVEQENNYQKLFHTWTGTSQK EEECCCCEEECCCCCCCCEEHHHHHHHHHHCCCCHHHCEEEECCCCHHHHHHHHCCCCCE FRFKMANNQAEYVDQATQQTIFHLSLDERKMSFNTDTINNFYFLNQQDDEDSLVDEIKLF EEEEECCCHHHHHHHHHHHEEEEEEECCCEEECCCCCCCCEEEECCCCCHHHHHHHHHHH TKFGQILEEVYNFEVDFNMFDARNNKVYEFDQTSLNTDIIDELFVDAAKNGFTLLNAEKL HHHHHHHHHHHCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHH LGAYLKLDNHVVFSIFQEIPATDQWAIQVNDKSEEKSLFDILKQYDFLNDWYVRNIADLK HHHHHHHCCHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHCE LKMLF EEECC >Mature Secondary Structure MDNTINEDKKRATLSDKLLKVQSDLDAGLSKGRSFAELFRTLTTTDDNVELLDAAKKLYA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHEE FVVDSDAVIFPQKFEASDYYLIFMTRLIELSGLKTKLGLEVEQENNYQKLFHTWTGTSQK EEECCCCEEECCCCCCCCEEHHHHHHHHHHCCCCHHHCEEEECCCCHHHHHHHHCCCCCE FRFKMANNQAEYVDQATQQTIFHLSLDERKMSFNTDTINNFYFLNQQDDEDSLVDEIKLF EEEEECCCHHHHHHHHHHHEEEEEEECCCEEECCCCCCCCEEEECCCCCHHHHHHHHHHH TKFGQILEEVYNFEVDFNMFDARNNKVYEFDQTSLNTDIIDELFVDAAKNGFTLLNAEKL HHHHHHHHHHHCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHH LGAYLKLDNHVVFSIFQEIPATDQWAIQVNDKSEEKSLFDILKQYDFLNDWYVRNIADLK HHHHHHHCCHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHCE LKMLF EEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA