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The map label for this gene is yodB [H]

Identifier: 116492488

GI number: 116492488

Start: 757392

End: 757724

Strand: Direct

Name: yodB [H]

Synonym: PEPE_0720

Alternate gene names: 116492488

Gene position: 757392-757724 (Clockwise)

Preceding gene: 116492487

Following gene: 116492489

Centisome position: 41.33

GC content: 38.14

Gene sequence:

>333_bases
ATGCAGAGTACACAACTAAAAGAACAAACTGATTTTGAACTTTGTCCAAAGTTTGAAAAGATGTTTGATATACTAGGAAA
AAAATGGAATGGACTTATTTTAGAAGTGCTTATGAATGCTGGTCCACAGCGTTTTAAAGACATTGCGCATAGTGTCACGA
AATGTAGTGACCGTGTACTTGTAGAGCGTTTGAAAAGCTTAGAGGAAGCTGGGCTAGTGGAACGATGTACTTATGAGGAT
TCTTCCTTAATTGAGTATCGATTAACAGAACAAGGTGAAAATCTACGTCCGGTGCTTGACGCCGCTCATAAATTTGCTGA
TTGCTGGTTTTAA

Upstream 100 bases:

>100_bases
TTACTGAATATTTTGATCATGTTCGCAAGGAATTTAAGATGAAACTCATGAAATATAAAGAGAAGGTTATTAAGTTTATC
TAGTAAAAGAGGTTTTTATA

Downstream 100 bases:

>100_bases
TTAGGTATTGACCTAATGCGTTTTTTTGGTTAAAGTAGCTAAGAGAATAAAAGCTCGAAGAGTAGTAGCTGATTTAAATT
ATCAGACAGAGAAGGAATCG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 110

Protein sequence:

>110_residues
MQSTQLKEQTDFELCPKFEKMFDILGKKWNGLILEVLMNAGPQRFKDIAHSVTKCSDRVLVERLKSLEEAGLVERCTYED
SSLIEYRLTEQGENLRPVLDAAHKFADCWF

Sequences:

>Translated_110_residues
MQSTQLKEQTDFELCPKFEKMFDILGKKWNGLILEVLMNAGPQRFKDIAHSVTKCSDRVLVERLKSLEEAGLVERCTYED
SSLIEYRLTEQGENLRPVLDAAHKFADCWF
>Mature_110_residues
MQSTQLKEQTDFELCPKFEKMFDILGKKWNGLILEVLMNAGPQRFKDIAHSVTKCSDRVLVERLKSLEEAGLVERCTYED
SSLIEYRLTEQGENLRPVLDAAHKFADCWF

Specific function: Negatively regulates yodC and azoR1 which may contribute to the degradation of aromatic compounds. Probably positively regulates the catechol-specific transcription of mhqNOP, mhqED, and mhqA [H]

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 12772; Mature: 12772

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSTQLKEQTDFELCPKFEKMFDILGKKWNGLILEVLMNAGPQRFKDIAHSVTKCSDRVL
CCCCCCCCCCCHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
VERLKSLEEAGLVERCTYEDSSLIEYRLTEQGENLRPVLDAAHKFADCWF
HHHHHHHHHCCHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQSTQLKEQTDFELCPKFEKMFDILGKKWNGLILEVLMNAGPQRFKDIAHSVTKCSDRVL
CCCCCCCCCCCHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
VERLKSLEEAGLVERCTYEDSSLIEYRLTEQGENLRPVLDAAHKFADCWF
HHHHHHHHHCCHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]