| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
Click here to switch to the map view.
The map label for this gene is dnaI [H]
Identifier: 116492461
GI number: 116492461
Start: 734227
End: 735156
Strand: Direct
Name: dnaI [H]
Synonym: PEPE_0693
Alternate gene names: 116492461
Gene position: 734227-735156 (Clockwise)
Preceding gene: 116492460
Following gene: 116492462
Centisome position: 40.07
GC content: 37.42
Gene sequence:
>930_bases ATGGAAAATGTCCGAGAAATTTTGCAAGAATTAATGAGCAAAAGAAAGCTCGACCAGCGTTTTAATAACGTGATGAAATC AGTGTATTCTGATCCAGAAGTGATTAGTTTTTGCGAGGAGCATCAAGACGAACTATCCAAGGAAGCTATCGAACGTGGAG CGGCTAAGCTGTATGAATTTGTTTCAGAACGAAATAAGATTAAAAATAACCAAGCAACCTTTTTACCGGGATATCAGCCA GAATTAGTCTTAAGCAATCATTTGATTGATATTGAGTATGTGCCCACGAAACAGACTCATTTATTAGAACAAGAACGTCA TCGAAAAGCGTTAGTTAAATCGATTAGTATGCCTAAATTAATCCGTCATGCTTCATTGGAGGGATACTATCAGGAACCAG AACGAACAGACGCTTTGGCTAAAACTTTAGCGTTTGTAAACGAATATTTAGAACGCCCTCAAGATTGGCATAAGGGTTTG TATTTGACGGGAAGTTTTGGTGTGGGAAAAACGTATCTAATGGGCGCAATGGGGAACGCTTTGGCTGATGAAGGATATTC GACAACTATTGTTCATTTTCCTAGTTTAGCTGTTGAATTAAAAAATGCGATTGGAAGTTCTAATACGATTCAAACTAAAA TCGATGCGATTAAAAAAGCTCCGATTTTGGTAATTGACGATATTGGAGCGGATAGTATTTCTTCTTGGATTAGGGATGAC GTATTGGGAGTAATTCTTGAATACCGAATGCAAGAAGAATTACCAACATTTTTTACATCTAATTTTTCAATGGACCAATT AGAGCGAGAACATCTAACAGTCAATCAGAGAGGCGAAGCAGAACCTTTAAAAGCGAAAAGATTGATGGAACGAATTAAAT TTTTGAGTGAGGAAGTCTCGATGACGGGAAAAAATCATCGACAGGATTGA
Upstream 100 bases:
>100_bases CCGCTAAGACTAAAGAACCCAAGCAAGTTAATCCAGAAACAACTAAAAAAATTAATGAACAACTTAAAAAACTTCGTTCT AGAGGCAAGGAGGGATAGTC
Downstream 100 bases:
>100_bases CAAACAATCAAAAATAGGTAGAATAAATGTATAAATCACAGTCAAACATGTAGTTTTTAATTCAGGGAGCGGAGCCGCGA CTGCAAGCGATGCACTTAAA
Product: primosomal protein DnaI
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 309; Mature: 309
Protein sequence:
>309_residues MENVREILQELMSKRKLDQRFNNVMKSVYSDPEVISFCEEHQDELSKEAIERGAAKLYEFVSERNKIKNNQATFLPGYQP ELVLSNHLIDIEYVPTKQTHLLEQERHRKALVKSISMPKLIRHASLEGYYQEPERTDALAKTLAFVNEYLERPQDWHKGL YLTGSFGVGKTYLMGAMGNALADEGYSTTIVHFPSLAVELKNAIGSSNTIQTKIDAIKKAPILVIDDIGADSISSWIRDD VLGVILEYRMQEELPTFFTSNFSMDQLEREHLTVNQRGEAEPLKAKRLMERIKFLSEEVSMTGKNHRQD
Sequences:
>Translated_309_residues MENVREILQELMSKRKLDQRFNNVMKSVYSDPEVISFCEEHQDELSKEAIERGAAKLYEFVSERNKIKNNQATFLPGYQP ELVLSNHLIDIEYVPTKQTHLLEQERHRKALVKSISMPKLIRHASLEGYYQEPERTDALAKTLAFVNEYLERPQDWHKGL YLTGSFGVGKTYLMGAMGNALADEGYSTTIVHFPSLAVELKNAIGSSNTIQTKIDAIKKAPILVIDDIGADSISSWIRDD VLGVILEYRMQEELPTFFTSNFSMDQLEREHLTVNQRGEAEPLKAKRLMERIKFLSEEVSMTGKNHRQD >Mature_309_residues MENVREILQELMSKRKLDQRFNNVMKSVYSDPEVISFCEEHQDELSKEAIERGAAKLYEFVSERNKIKNNQATFLPGYQP ELVLSNHLIDIEYVPTKQTHLLEQERHRKALVKSISMPKLIRHASLEGYYQEPERTDALAKTLAFVNEYLERPQDWHKGL YLTGSFGVGKTYLMGAMGNALADEGYSTTIVHFPSLAVELKNAIGSSNTIQTKIDAIKKAPILVIDDIGADSISSWIRDD VLGVILEYRMQEELPTFFTSNFSMDQLEREHLTVNQRGEAEPLKAKRLMERIKFLSEEVSMTGKNHRQD
Specific function: Probably involved in DNA replication [H]
COG id: COG1484
COG function: function code L; DNA replication protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR009928 - InterPro: IPR002611 [H]
Pfam domain/function: PF07319 DnaI_N; PF01695 IstB [H]
EC number: NA
Molecular weight: Translated: 35455; Mature: 35455
Theoretical pI: Translated: 5.87; Mature: 5.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MENVREILQELMSKRKLDQRFNNVMKSVYSDPEVISFCEEHQDELSKEAIERGAAKLYEF CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VSERNKIKNNQATFLPGYQPELVLSNHLIDIEYVPTKQTHLLEQERHRKALVKSISMPKL HHHHHHCCCCCCCCCCCCCCCHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHH IRHASLEGYYQEPERTDALAKTLAFVNEYLERPQDWHKGLYLTGSFGVGKTYLMGAMGNA HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCEEEEECCCCCHHHHHHHHHHH LADEGYSTTIVHFPSLAVELKNAIGSSNTIQTKIDAIKKAPILVIDDIGADSISSWIRDD HHCCCCCEEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHH VLGVILEYRMQEELPTFFTSNFSMDQLEREHLTVNQRGEAEPLKAKRLMERIKFLSEEVS HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH MTGKNHRQD HCCCCCCCC >Mature Secondary Structure MENVREILQELMSKRKLDQRFNNVMKSVYSDPEVISFCEEHQDELSKEAIERGAAKLYEF CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VSERNKIKNNQATFLPGYQPELVLSNHLIDIEYVPTKQTHLLEQERHRKALVKSISMPKL HHHHHHCCCCCCCCCCCCCCCHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHH IRHASLEGYYQEPERTDALAKTLAFVNEYLERPQDWHKGLYLTGSFGVGKTYLMGAMGNA HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCEEEEECCCCCHHHHHHHHHHH LADEGYSTTIVHFPSLAVELKNAIGSSNTIQTKIDAIKKAPILVIDDIGADSISSWIRDD HHCCCCCEEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHH VLGVILEYRMQEELPTFFTSNFSMDQLEREHLTVNQRGEAEPLKAKRLMERIKFLSEEVS HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH MTGKNHRQD HCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3027671; 8969504; 9387221; 9384377; 3027697; 1549481; 7773414 [H]