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The map label for this gene is yhaM [H]

Identifier: 116492444

GI number: 116492444

Start: 717468

End: 718415

Strand: Direct

Name: yhaM [H]

Synonym: PEPE_0676

Alternate gene names: 116492444

Gene position: 717468-718415 (Clockwise)

Preceding gene: 116492443

Following gene: 116492448

Centisome position: 39.15

GC content: 37.97

Gene sequence:

>948_bases
TTGACGAAAAAAATAACCGAATTTCAAAATGATGAAGAAATGGAATTATTTGTCTTAATCAAATCTGCGGAAAAGCGGGT
GACCAAAGCTGGAAAAGATTTTATTTCGATGAAGTTTCAAGATCGATCTGGAGACATTCACGGAAACTGCTGGGATGCTA
AGGAAGAAGATTTTAAAAATTTCCAACCTGGGCGAGTAGTTCTTCTAAGAGGAAAAAGAGAAACTTATAAGAATGCTCCA
CAAGTAAAGATTATGGCGATGCGTTTAGCTACCGATGAGGAACCAAATGATCCTACTGCTTATACTGAAAAAGGACCGGT
TTCAGCTGAAAAATTGCGAGAAGAATTTACGCAATTGATGTTTGAAATCAACAATCCAGATTGGAATCGAGTGGTTAGAT
ATTTATTGAAGAAGTATGACCGCGAATTTTTCAGTTTTCCAGCAGCTAAAACTAACCATCATGCTTTTGAGGGTGGTTTG
GCTTTCCACACGCTTTCAATTGTTAATTTAGCTAAGTCGGTTGCTGCTCAATATGAACAAGTAGATCAATCTTTATTAAT
TGCGGGAGCCATCCTACATGATCTAGGTAAAACGATTGAATTATCAGGGCCCATTGCAACTCAGTATACGGTTGAAGGCA
ATTTGTTGGGGCACATTGTCATTGTCGACGAGGAGATTGTGGAAGCAGCTAAGGATTTAAAAATTGATCCGAGCTCTGAA
TCAATGGTGGTATTAAGACATATGATTGTTGCTCATCATGGTTTGAAAGAATATGGTTCACCAGTTGAACCGCACATGCT
GGAAGCAGTTATTTTACACGCATTGGACGAACTTGATGCTGAAATTCAAATGGTATCTGGAGCTTTGAAAAATACACAAC
CTGGAGCTTTCAGTGAACGAATTTTTGGTATGGATGGACGTAATTTTTATAAACCAGAAAGCAAATAA

Upstream 100 bases:

>100_bases
AAACTCAAGTTATTTATTTTTCTGCCAAGAAAGAAGTTTACGACTTAATTGATGACCAAAAAATTATTAATTTAAATGAA
AAATAAAAGGGGGAGATATT

Downstream 100 bases:

>100_bases
AAAAGATGAACGAGAAATCGTTCATCTTTTTTATTTAGCATTATTTAGTACTTGAGCTAGCAGAGCTACCAAGGTAATCG
TCAAGAACGTTCTTAAGGTC

Product: HD-superfamily hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MTKKITEFQNDEEMELFVLIKSAEKRVTKAGKDFISMKFQDRSGDIHGNCWDAKEEDFKNFQPGRVVLLRGKRETYKNAP
QVKIMAMRLATDEEPNDPTAYTEKGPVSAEKLREEFTQLMFEINNPDWNRVVRYLLKKYDREFFSFPAAKTNHHAFEGGL
AFHTLSIVNLAKSVAAQYEQVDQSLLIAGAILHDLGKTIELSGPIATQYTVEGNLLGHIVIVDEEIVEAAKDLKIDPSSE
SMVVLRHMIVAHHGLKEYGSPVEPHMLEAVILHALDELDAEIQMVSGALKNTQPGAFSERIFGMDGRNFYKPESK

Sequences:

>Translated_315_residues
MTKKITEFQNDEEMELFVLIKSAEKRVTKAGKDFISMKFQDRSGDIHGNCWDAKEEDFKNFQPGRVVLLRGKRETYKNAP
QVKIMAMRLATDEEPNDPTAYTEKGPVSAEKLREEFTQLMFEINNPDWNRVVRYLLKKYDREFFSFPAAKTNHHAFEGGL
AFHTLSIVNLAKSVAAQYEQVDQSLLIAGAILHDLGKTIELSGPIATQYTVEGNLLGHIVIVDEEIVEAAKDLKIDPSSE
SMVVLRHMIVAHHGLKEYGSPVEPHMLEAVILHALDELDAEIQMVSGALKNTQPGAFSERIFGMDGRNFYKPESK
>Mature_314_residues
TKKITEFQNDEEMELFVLIKSAEKRVTKAGKDFISMKFQDRSGDIHGNCWDAKEEDFKNFQPGRVVLLRGKRETYKNAPQ
VKIMAMRLATDEEPNDPTAYTEKGPVSAEKLREEFTQLMFEINNPDWNRVVRYLLKKYDREFFSFPAAKTNHHAFEGGLA
FHTLSIVNLAKSVAAQYEQVDQSLLIAGAILHDLGKTIELSGPIATQYTVEGNLLGHIVIVDEEIVEAAKDLKIDPSSES
MVVLRHMIVAHHGLKEYGSPVEPHMLEAVILHALDELDAEIQMVSGALKNTQPGAFSERIFGMDGRNFYKPESK

Specific function: Shows a 3'-5' exoribonuclease activity [H]

COG id: COG3481

COG function: function code R; Predicted HD-superfamily hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yhaM family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020873
- InterPro:   IPR003607
- InterPro:   IPR012340
- InterPro:   IPR004365 [H]

Pfam domain/function: PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 35598; Mature: 35467

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKITEFQNDEEMELFVLIKSAEKRVTKAGKDFISMKFQDRSGDIHGNCWDAKEEDFKN
CCCCCCCCCCCCCEEEEEEEHHHHHHHHHHCCHHEEEEEECCCCCCCCCCCCCCHHHHHC
FQPGRVVLLRGKRETYKNAPQVKIMAMRLATDEEPNDPTAYTEKGPVSAEKLREEFTQLM
CCCCEEEEEECCHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
FEINNPDWNRVVRYLLKKYDREFFSFPAAKTNHHAFEGGLAFHTLSIVNLAKSVAAQYEQ
EECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHH
VDQSLLIAGAILHDLGKTIELSGPIATQYTVEGNLLGHIVIVDEEIVEAAKDLKIDPSSE
HHHHHHHHHHHHHHCCCEEEECCCCEEEEEECCCEEEEEEEECHHHHHHHHCCCCCCCCC
SMVVLRHMIVAHHGLKEYGSPVEPHMLEAVILHALDELDAEIQMVSGALKNTQPGAFSER
HHHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
IFGMDGRNFYKPESK
HCCCCCCCCCCCCCC
>Mature Secondary Structure 
TKKITEFQNDEEMELFVLIKSAEKRVTKAGKDFISMKFQDRSGDIHGNCWDAKEEDFKN
CCCCCCCCCCCCEEEEEEEHHHHHHHHHHCCHHEEEEEECCCCCCCCCCCCCCHHHHHC
FQPGRVVLLRGKRETYKNAPQVKIMAMRLATDEEPNDPTAYTEKGPVSAEKLREEFTQLM
CCCCEEEEEECCHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
FEINNPDWNRVVRYLLKKYDREFFSFPAAKTNHHAFEGGLAFHTLSIVNLAKSVAAQYEQ
EECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHH
VDQSLLIAGAILHDLGKTIELSGPIATQYTVEGNLLGHIVIVDEEIVEAAKDLKIDPSSE
HHHHHHHHHHHHHHCCCEEEECCCCEEEEEECCCEEEEEEEECHHHHHHHHCCCCCCCCC
SMVVLRHMIVAHHGLKEYGSPVEPHMLEAVILHALDELDAEIQMVSGALKNTQPGAFSER
HHHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
IFGMDGRNFYKPESK
HCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA