| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is recX [H]
Identifier: 116492393
GI number: 116492393
Start: 653845
End: 654621
Strand: Direct
Name: recX [H]
Synonym: PEPE_0599
Alternate gene names: 116492393
Gene position: 653845-654621 (Clockwise)
Preceding gene: 116492391
Following gene: 116492394
Centisome position: 35.68
GC content: 43.11
Gene sequence:
>777_bases ATGATTACCGCCCAGAAAAAGGCTGGTCGCTACAATGTTTTTCTTAATGGTGAATATGCGTTTCCCATTAGTGAAGAAAC CTTTATCCATTTTCGTTTAAGTAAAGGGATGGAAATTACGGGCGCGCTCTTAGAAGAGATTGGTGAATATGAGACGAGTG CGGAAGCCTACAATAAGGCTTTAAATTTCTTAACGGGTCAATTGCGGACACAAGATGAGGTGGCTAAGAAACTCTTCAAG CTGGATTTCCCAGAAGAGGTTGTTGGTCCTGTGTTAGCTAAGCTGACTGATTTGAACTTGCTGGATGATGCCGAATATGC CAAGAGTTACGTTCGGACGATGATGAAGACGGGGGACAAGGGACCGCGTTATCTAATCAACCATTTGCGTCAAAAAGGGG TTTACGAGAATGACATCCAAACGGGCCTTGCTCTTTTCACTGCCGAAGACCAAGTGGAGCTGGCGGTCCAAGTCGGCAGC AAAATTCAAAAACGCCAAAGTAATTCCGCCCTTAAACAACAGAAACTCAAAGTTCGACAGACTTTGATGAATAAGGGCTT TAATTCGGCTACGATTGATTTAGCACTCCAGAAAATCGAATTTAAGGTTGACGAGGAGGCCGAATATGTAAAGTTAGTTA AGTTGGGTGAACGTTTAGTTCGAAAACATGCGGGTCTCCCTGCCTATAGTAAAAAAGCCAAAATCAAGCAGGCTTTGTAC AACAAAGGCTTTGAAATTGACTTGATTGAACGGTTCATGCGTGAAAACGAGTTATAG
Upstream 100 bases:
>100_bases TGGGCATATTTAAGTAACCTTCTTTCCAATTAATTCTTATCAAAGTATAGCAAAAAAGGAGCTGATTAACATTAATTCAG CAGAAACTAAAAAAATTACC
Downstream 100 bases:
>100_bases AATTCTGTAGGAAAGCTTAAAGCATGGTGCAAATCTAAGGCTGGTTTTGTTATAATTGAAGAGAAATTCAAAGCTTTCAG CTGTAGAAAGTGGGCTTAGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 258; Mature: 258
Protein sequence:
>258_residues MITAQKKAGRYNVFLNGEYAFPISEETFIHFRLSKGMEITGALLEEIGEYETSAEAYNKALNFLTGQLRTQDEVAKKLFK LDFPEEVVGPVLAKLTDLNLLDDAEYAKSYVRTMMKTGDKGPRYLINHLRQKGVYENDIQTGLALFTAEDQVELAVQVGS KIQKRQSNSALKQQKLKVRQTLMNKGFNSATIDLALQKIEFKVDEEAEYVKLVKLGERLVRKHAGLPAYSKKAKIKQALY NKGFEIDLIERFMRENEL
Sequences:
>Translated_258_residues MITAQKKAGRYNVFLNGEYAFPISEETFIHFRLSKGMEITGALLEEIGEYETSAEAYNKALNFLTGQLRTQDEVAKKLFK LDFPEEVVGPVLAKLTDLNLLDDAEYAKSYVRTMMKTGDKGPRYLINHLRQKGVYENDIQTGLALFTAEDQVELAVQVGS KIQKRQSNSALKQQKLKVRQTLMNKGFNSATIDLALQKIEFKVDEEAEYVKLVKLGERLVRKHAGLPAYSKKAKIKQALY NKGFEIDLIERFMRENEL >Mature_258_residues MITAQKKAGRYNVFLNGEYAFPISEETFIHFRLSKGMEITGALLEEIGEYETSAEAYNKALNFLTGQLRTQDEVAKKLFK LDFPEEVVGPVLAKLTDLNLLDDAEYAKSYVRTMMKTGDKGPRYLINHLRQKGVYENDIQTGLALFTAEDQVELAVQVGS KIQKRQSNSALKQQKLKVRQTLMNKGFNSATIDLALQKIEFKVDEEAEYVKLVKLGERLVRKHAGLPAYSKKAKIKQALY NKGFEIDLIERFMRENEL
Specific function: Modulates recA activity [H]
COG id: COG2137
COG function: function code R; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the recX family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003783 [H]
Pfam domain/function: PF02631 RecX [H]
EC number: NA
Molecular weight: Translated: 29424; Mature: 29424
Theoretical pI: Translated: 9.44; Mature: 9.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITAQKKAGRYNVFLNGEYAFPISEETFIHFRLSKGMEITGALLEEIGEYETSAEAYNKA CCCCCCCCCCEEEEECCEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH LNFLTGQLRTQDEVAKKLFKLDFPEEVVGPVLAKLTDLNLLDDAEYAKSYVRTMMKTGDK HHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC GPRYLINHLRQKGVYENDIQTGLALFTAEDQVELAVQVGSKIQKRQSNSALKQQKLKVRQ CHHHHHHHHHHCCCCHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TLMNKGFNSATIDLALQKIEFKVDEEAEYVKLVKLGERLVRKHAGLPAYSKKAKIKQALY HHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH NKGFEIDLIERFMRENEL HCCCCHHHHHHHHHHCCC >Mature Secondary Structure MITAQKKAGRYNVFLNGEYAFPISEETFIHFRLSKGMEITGALLEEIGEYETSAEAYNKA CCCCCCCCCCEEEEECCEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH LNFLTGQLRTQDEVAKKLFKLDFPEEVVGPVLAKLTDLNLLDDAEYAKSYVRTMMKTGDK HHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC GPRYLINHLRQKGVYENDIQTGLALFTAEDQVELAVQVGSKIQKRQSNSALKQQKLKVRQ CHHHHHHHHHHCCCCHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TLMNKGFNSATIDLALQKIEFKVDEEAEYVKLVKLGERLVRKHAGLPAYSKKAKIKQALY HHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH NKGFEIDLIERFMRENEL HCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA