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The map label for this gene is sufD [H]

Identifier: 116492288

GI number: 116492288

Start: 540790

End: 541818

Strand: Direct

Name: sufD [H]

Synonym: PEPE_0487

Alternate gene names: 116492288

Gene position: 540790-541818 (Clockwise)

Preceding gene: 116492287

Following gene: 116492289

Centisome position: 29.51

GC content: 43.05

Gene sequence:

>1029_bases
ATGGGGATTAAATATGATCCTCAAAATTTTAGCTATGCATCGATGACAACGACGAAGTGGTCGTGGAAAGCTAATCCATT
AGCCTTACAAGAGCTACAGGCCGCAGGTGGTAGGATTCAAGTTTTCGGCTCCACGCAGCAGCTTAGTGTCGCCGGAAAAC
GATTGTTAGAAAGTGAATTGCAAGCTAATGTGGATAATCAATTTATGTTGGAACATGCCCAGCAATCTTGGCAAGGACTT
GAGCTGATTCTACCAGCACGGGTGACCTTAAAAAATAAGTTGCACCTCGAAATTACCTTCGAAGCAGCACAACCTTCCGC
TTTTACCATGCTATTGAACGTTGGTGCCGGAAGTCAGATGCAATTAGAACGCGAAATCCATTATCCGCCAGTTAGTACCC
GGCTTAACTTATTAACATGTGGAAAAGTGGAAGCCGATAGTCGATTAAATTTAGTTGATCGGTTGCAGGGCGGACAGTCG
CCACAGCAAAGTTTATGGATGGCAAACTTGCATTGTCAAAAAGACGCTCAGTTAGATTGGTCATTTTACCCTGAGGTGAA
GGGTAAAGTACTTGGAAAATGTATCACGGTGCTTGAAGAACAGGGAAGCTCTGCTGTATTCAAAGTGGGCCAATTTGGTC
GTCGGGATGATTGGATTGGAATCCAAGGATTAATCGACCATCGTGCTCCTAAGACATTTAGCCGAATCAAAATGCGGGGA
GTTCTTTATGAAAAGGCCCAGGTGTATTTTACTAGTATCGGTAAGATTAATAAGGGAGCCCATGGAGCTAATGCAGCCCA
AGAAAGCCGGTTAATGACCATTGAACCGCATGCTAAGGGAAGTGTTAATCCCCTGTTAATTATTGACGAAAATGATGTGC
AAGCTGGTCATGCTGCTAGTGTAGGACAGTATGATGAAGAAGCGTTGTACTATCTTTTAAGTCGGGGATTAGTGGAGGCG
GATGCTAAACAAATTTTAATCAATAATTTCATGGAACCTGTTTTACCAAAAGAAACTGTGGAAAAGTAA

Upstream 100 bases:

>100_bases
GAGCTAGAAAAAACGGGTTATGCCGATTTAAGTGGTGCCGTGGAGGGGAGCGATAACGATTGAAACAAAATTAGAATCGC
CAACTAAATATCCGAAAATT

Downstream 100 bases:

>100_bases
TGGTGGTAAACAATGATAGATGATCAAAAAATAGCCTATTTAGATAATGCAGCGACCATGCCGATGCCAGACGAAGTATT
GGAAGTAATTGATATGTACT

Product: Fe-S cluster assembly ABC-type transport system, permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MGIKYDPQNFSYASMTTTKWSWKANPLALQELQAAGGRIQVFGSTQQLSVAGKRLLESELQANVDNQFMLEHAQQSWQGL
ELILPARVTLKNKLHLEITFEAAQPSAFTMLLNVGAGSQMQLEREIHYPPVSTRLNLLTCGKVEADSRLNLVDRLQGGQS
PQQSLWMANLHCQKDAQLDWSFYPEVKGKVLGKCITVLEEQGSSAVFKVGQFGRRDDWIGIQGLIDHRAPKTFSRIKMRG
VLYEKAQVYFTSIGKINKGAHGANAAQESRLMTIEPHAKGSVNPLLIIDENDVQAGHAASVGQYDEEALYYLLSRGLVEA
DAKQILINNFMEPVLPKETVEK

Sequences:

>Translated_342_residues
MGIKYDPQNFSYASMTTTKWSWKANPLALQELQAAGGRIQVFGSTQQLSVAGKRLLESELQANVDNQFMLEHAQQSWQGL
ELILPARVTLKNKLHLEITFEAAQPSAFTMLLNVGAGSQMQLEREIHYPPVSTRLNLLTCGKVEADSRLNLVDRLQGGQS
PQQSLWMANLHCQKDAQLDWSFYPEVKGKVLGKCITVLEEQGSSAVFKVGQFGRRDDWIGIQGLIDHRAPKTFSRIKMRG
VLYEKAQVYFTSIGKINKGAHGANAAQESRLMTIEPHAKGSVNPLLIIDENDVQAGHAASVGQYDEEALYYLLSRGLVEA
DAKQILINNFMEPVLPKETVEK
>Mature_341_residues
GIKYDPQNFSYASMTTTKWSWKANPLALQELQAAGGRIQVFGSTQQLSVAGKRLLESELQANVDNQFMLEHAQQSWQGLE
LILPARVTLKNKLHLEITFEAAQPSAFTMLLNVGAGSQMQLEREIHYPPVSTRLNLLTCGKVEADSRLNLVDRLQGGQSP
QQSLWMANLHCQKDAQLDWSFYPEVKGKVLGKCITVLEEQGSSAVFKVGQFGRRDDWIGIQGLIDHRAPKTFSRIKMRGV
LYEKAQVYFTSIGKINKGAHGANAAQESRLMTIEPHAKGSVNPLLIIDENDVQAGHAASVGQYDEEALYYLLSRGLVEAD
AKQILINNFMEPVLPKETVEK

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 38082; Mature: 37951

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIKYDPQNFSYASMTTTKWSWKANPLALQELQAAGGRIQVFGSTQQLSVAGKRLLESEL
CCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHH
QANVDNQFMLEHAQQSWQGLELILPARVTLKNKLHLEITFEAAQPSAFTMLLNVGAGSQM
HCCCCHHHHHHHHHHHCCCEEEEECCEEEECCEEEEEEEEECCCCCEEEEEEECCCCCCE
QLEREIHYPPVSTRLNLLTCGKVEADSRLNLVDRLQGGQSPQQSLWMANLHCQKDAQLDW
EEEECCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCHHHHHEEEEEEECCCCCCCC
SFYPEVKGKVLGKCITVLEEQGSSAVFKVGQFGRRDDWIGIQGLIDHRAPKTFSRIKMRG
EECCCHHHHHHHHHHHHHHHCCCCEEEEHHCCCCCCCCEEHHHHHHCCCCHHHHHHHHHH
VLYEKAQVYFTSIGKINKGAHGANAAQESRLMTIEPHAKGSVNPLLIIDENDVQAGHAAS
HHHHHHEEEEEECCCCCCCCCCCCCHHHCCEEEECCCCCCCCCEEEEEECCCCCCCCCCC
VGQYDEEALYYLLSRGLVEADAKQILINNFMEPVLPKETVEK
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHCC
>Mature Secondary Structure 
GIKYDPQNFSYASMTTTKWSWKANPLALQELQAAGGRIQVFGSTQQLSVAGKRLLESEL
CCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHH
QANVDNQFMLEHAQQSWQGLELILPARVTLKNKLHLEITFEAAQPSAFTMLLNVGAGSQM
HCCCCHHHHHHHHHHHCCCEEEEECCEEEECCEEEEEEEEECCCCCEEEEEEECCCCCCE
QLEREIHYPPVSTRLNLLTCGKVEADSRLNLVDRLQGGQSPQQSLWMANLHCQKDAQLDW
EEEECCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCHHHHHEEEEEEECCCCCCCC
SFYPEVKGKVLGKCITVLEEQGSSAVFKVGQFGRRDDWIGIQGLIDHRAPKTFSRIKMRG
EECCCHHHHHHHHHHHHHHHCCCCEEEEHHCCCCCCCCEEHHHHHHCCCCHHHHHHHHHH
VLYEKAQVYFTSIGKINKGAHGANAAQESRLMTIEPHAKGSVNPLLIIDENDVQAGHAAS
HHHHHHEEEEEECCCCCCCCCCCCCHHHCCEEEECCCCCCCCCEEEEEECCCCCCCCCCC
VGQYDEEALYYLLSRGLVEADAKQILINNFMEPVLPKETVEK
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]