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The map label for this gene is ycaM [H]

Identifier: 116492205

GI number: 116492205

Start: 447364

End: 448995

Strand: Reverse

Name: ycaM [H]

Synonym: PEPE_0402

Alternate gene names: 116492205

Gene position: 448995-447364 (Counterclockwise)

Preceding gene: 116492206

Following gene: 116492204

Centisome position: 24.5

GC content: 36.76

Gene sequence:

>1632_bases
ATGGATAATTCACCTTTAGATTCAAAAAAAAGGTATATTAGTTGGCCTGTAGTAGCCTTAATGGACTTTGTAACGGTTAT
TGGGTTCGACGATTTAATTTATAATTTTCACAATCAAGGTTTAGCAATTGTTTCAACTTGGATTTTAATGATTTTACTTT
TTGTTTGGCCCTATGAAATGATGGTTGGACAATTAGGTGGAACTTTCAACGAAGATGGGGGTGGTTTAGCATCCTGGATT
CGTTCTACCAATGGAGATTTAGCCGGATACATCGTGGCTTTCTTCTACTGGATTGCTGGTTTACCATACGTAGTCGATGT
TGCTAATTCGGTAGTTGTATCAATTAGTTGGTTAGTCAAAGGCAATGGTGATTTACAAAAATACATGCCAACCATCATGT
TTGCTATTTTTACTGCCGTCGTCTTCTTAGTATTTATTTGGTTCCAACACTTCTTCAAAAACCGTTCACTTGAAATTCTA
AGTACCATTGGTGGCGGTGCGATGTTCGTGATGACCATCCTATTTGTAATTATGACCGTAGTGGCTTTAATGCACGGTCG
TCATATTGCAACTCAACCATTTAATTTAAAAGCATTTATTCCTAAGATTGATGGTCATTTCTTATCAACATTTGGTTTGT
TAATCTTTGCTATCAATGGTGCTGAACTAGCCGCACCATACGTTAAAGAAATGAAAGATGGAAAACGCGATTTTCCTAAA
GCCATGATGATGCTCCTCTTGATGACCGTTTTCTTAACCGTCTTTGGATCATTCTCATTAGCAGTGTTCTTTAATGCCCA
CCATTTACCATATGATTTGAAGATGAATGGCTCTTATTATGCTTTCCAAGCATTGGGTGATGAATTCGGGATTGGAAATA
CATTCATGTACATCTTCGCTGTCAGTCAAGCAGTTTATATGTTTGCTCAATTGGCCGTAATTTTAGACGCAAGTACCCGA
ATCTTCCTTTCAGATGTAGCTATGAAGTATCTTCCTAAATCACTAGGTAAGTTAAACAGTGATGGATTACCAATTAATGG
TTACTGGTTAACTACTGGAATTGTTTCACTAGTGCTTTTCCTTAGTAACTGGCTTCCAAGTATCAATGATATGTTTAACT
GGTTACTTAATATTAATGGGATTGTTTCACCATTCGTTACTAGTTTTGTTTTCTTTGCCTTTATGCGAATTCGGCAAAAT
AGTAAGGATTTCCCATCACAATATGTTTTCATCAAAAATGATATTGTAGCTTGGTTAGTTGGAGCTTGGTGTTTCGTTAT
TACCATCGTCTTCTCGTTCTTAGGAATTCGTCCTACTGACGCAACTCCTGGTACTAACTTATACGATAAAGAACTTGCAC
TTAATATCATTATTCCAATTATTTTTATTGTACTCTCAGCGCTACTACCATTTATGGCTTGGGTAGAACGGAATGAATTA
AAGAAAGTTTCTCGTTCTTCTTACCCATTTGCGATTGTCACCTTTGCCATCGGTGCTTACTTCACCATTCAAGGTGGGTA
CAATGCCCAAATTTGGTCAGGCGTCTTTGCTTGGGGAATCGTAGACGTTATTACAATTGCTGTTTATGCACTGTTCTTTA
ATATCTTTAAAAAAGCATTTAAGAAAGCATAG

Upstream 100 bases:

>100_bases
TAATCGTTTTACTTTAGACGATGATGGCCTTCATCTCGATGAATACAACAATCATGGAGACGAAGAGCTTTTGTAAACAA
ATTTTAGGAGAGATAAAAGA

Downstream 100 bases:

>100_bases
GAGTTACATGAAAACCGTCAATTATTATTTCGTCCGCCATGGACAAACTTTATTTAATCGTTATCGTCATCTTCAAGGTT
GGTCAGACTCACCACTAACT

Product: amino acid transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 543; Mature: 543

Protein sequence:

>543_residues
MDNSPLDSKKRYISWPVVALMDFVTVIGFDDLIYNFHNQGLAIVSTWILMILLFVWPYEMMVGQLGGTFNEDGGGLASWI
RSTNGDLAGYIVAFFYWIAGLPYVVDVANSVVVSISWLVKGNGDLQKYMPTIMFAIFTAVVFLVFIWFQHFFKNRSLEIL
STIGGGAMFVMTILFVIMTVVALMHGRHIATQPFNLKAFIPKIDGHFLSTFGLLIFAINGAELAAPYVKEMKDGKRDFPK
AMMMLLLMTVFLTVFGSFSLAVFFNAHHLPYDLKMNGSYYAFQALGDEFGIGNTFMYIFAVSQAVYMFAQLAVILDASTR
IFLSDVAMKYLPKSLGKLNSDGLPINGYWLTTGIVSLVLFLSNWLPSINDMFNWLLNINGIVSPFVTSFVFFAFMRIRQN
SKDFPSQYVFIKNDIVAWLVGAWCFVITIVFSFLGIRPTDATPGTNLYDKELALNIIIPIIFIVLSALLPFMAWVERNEL
KKVSRSSYPFAIVTFAIGAYFTIQGGYNAQIWSGVFAWGIVDVITIAVYALFFNIFKKAFKKA

Sequences:

>Translated_543_residues
MDNSPLDSKKRYISWPVVALMDFVTVIGFDDLIYNFHNQGLAIVSTWILMILLFVWPYEMMVGQLGGTFNEDGGGLASWI
RSTNGDLAGYIVAFFYWIAGLPYVVDVANSVVVSISWLVKGNGDLQKYMPTIMFAIFTAVVFLVFIWFQHFFKNRSLEIL
STIGGGAMFVMTILFVIMTVVALMHGRHIATQPFNLKAFIPKIDGHFLSTFGLLIFAINGAELAAPYVKEMKDGKRDFPK
AMMMLLLMTVFLTVFGSFSLAVFFNAHHLPYDLKMNGSYYAFQALGDEFGIGNTFMYIFAVSQAVYMFAQLAVILDASTR
IFLSDVAMKYLPKSLGKLNSDGLPINGYWLTTGIVSLVLFLSNWLPSINDMFNWLLNINGIVSPFVTSFVFFAFMRIRQN
SKDFPSQYVFIKNDIVAWLVGAWCFVITIVFSFLGIRPTDATPGTNLYDKELALNIIIPIIFIVLSALLPFMAWVERNEL
KKVSRSSYPFAIVTFAIGAYFTIQGGYNAQIWSGVFAWGIVDVITIAVYALFFNIFKKAFKKA
>Mature_543_residues
MDNSPLDSKKRYISWPVVALMDFVTVIGFDDLIYNFHNQGLAIVSTWILMILLFVWPYEMMVGQLGGTFNEDGGGLASWI
RSTNGDLAGYIVAFFYWIAGLPYVVDVANSVVVSISWLVKGNGDLQKYMPTIMFAIFTAVVFLVFIWFQHFFKNRSLEIL
STIGGGAMFVMTILFVIMTVVALMHGRHIATQPFNLKAFIPKIDGHFLSTFGLLIFAINGAELAAPYVKEMKDGKRDFPK
AMMMLLLMTVFLTVFGSFSLAVFFNAHHLPYDLKMNGSYYAFQALGDEFGIGNTFMYIFAVSQAVYMFAQLAVILDASTR
IFLSDVAMKYLPKSLGKLNSDGLPINGYWLTTGIVSLVLFLSNWLPSINDMFNWLLNINGIVSPFVTSFVFFAFMRIRQN
SKDFPSQYVFIKNDIVAWLVGAWCFVITIVFSFLGIRPTDATPGTNLYDKELALNIIIPIIFIVLSALLPFMAWVERNEL
KKVSRSSYPFAIVTFAIGAYFTIQGGYNAQIWSGVFAWGIVDVITIAVYALFFNIFKKAFKKA

Specific function: Unknown

COG id: COG0531

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Escherichia coli, GI87081798, Length=469, Percent_Identity=35.3944562899787, Blast_Score=331, Evalue=7e-92,
Organism=Escherichia coli, GI48994921, Length=411, Percent_Identity=22.8710462287105, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI87082380, Length=433, Percent_Identity=20.3233256351039, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 61085; Mature: 61085

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNSPLDSKKRYISWPVVALMDFVTVIGFDDLIYNFHNQGLAIVSTWILMILLFVWPYEM
CCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
MVGQLGGTFNEDGGGLASWIRSTNGDLAGYIVAFFYWIAGLPYVVDVANSVVVSISWLVK
HHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHEEEEEEEE
GNGDLQKYMPTIMFAIFTAVVFLVFIWFQHFFKNRSLEILSTIGGGAMFVMTILFVIMTV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHH
VALMHGRHIATQPFNLKAFIPKIDGHFLSTFGLLIFAINGAELAAPYVKEMKDGKRDFPK
HHHHCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHEECCHHHHHHHHHHHHCCCCCHHH
AMMMLLLMTVFLTVFGSFSLAVFFNAHHLPYDLKMNGSYYAFQALGDEFGIGNTFMYIFA
HHHHHHHHHHHHHHHCCHHEEEEEECCCCCEEEEECCCEEEHHHCCCCCCCCHHHHHHHH
VSQAVYMFAQLAVILDASTRIFLSDVAMKYLPKSLGKLNSDGLPINGYWLTTGIVSLVLF
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHH
LSNWLPSINDMFNWLLNINGIVSPFVTSFVFFAFMRIRQNSKDFPSQYVFIKNDIVAWLV
HHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHH
GAWCFVITIVFSFLGIRPTDATPGTNLYDKELALNIIIPIIFIVLSALLPFMAWVERNEL
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKVSRSSYPFAIVTFAIGAYFTIQGGYNAQIWSGVFAWGIVDVITIAVYALFFNIFKKAF
HHHHCCCCCHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKA
HCC
>Mature Secondary Structure
MDNSPLDSKKRYISWPVVALMDFVTVIGFDDLIYNFHNQGLAIVSTWILMILLFVWPYEM
CCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
MVGQLGGTFNEDGGGLASWIRSTNGDLAGYIVAFFYWIAGLPYVVDVANSVVVSISWLVK
HHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHEEEEEEEE
GNGDLQKYMPTIMFAIFTAVVFLVFIWFQHFFKNRSLEILSTIGGGAMFVMTILFVIMTV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHH
VALMHGRHIATQPFNLKAFIPKIDGHFLSTFGLLIFAINGAELAAPYVKEMKDGKRDFPK
HHHHCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHEECCHHHHHHHHHHHHCCCCCHHH
AMMMLLLMTVFLTVFGSFSLAVFFNAHHLPYDLKMNGSYYAFQALGDEFGIGNTFMYIFA
HHHHHHHHHHHHHHHCCHHEEEEEECCCCCEEEEECCCEEEHHHCCCCCCCCHHHHHHHH
VSQAVYMFAQLAVILDASTRIFLSDVAMKYLPKSLGKLNSDGLPINGYWLTTGIVSLVLF
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHH
LSNWLPSINDMFNWLLNINGIVSPFVTSFVFFAFMRIRQNSKDFPSQYVFIKNDIVAWLV
HHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHH
GAWCFVITIVFSFLGIRPTDATPGTNLYDKELALNIIIPIIFIVLSALLPFMAWVERNEL
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKVSRSSYPFAIVTFAIGAYFTIQGGYNAQIWSGVFAWGIVDVITIAVYALFFNIFKKAF
HHHHCCCCCHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKA
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]