| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is 116492128
Identifier: 116492128
GI number: 116492128
Start: 374427
End: 374834
Strand: Reverse
Name: 116492128
Synonym: PEPE_0325
Alternate gene names: NA
Gene position: 374834-374427 (Counterclockwise)
Preceding gene: 116492133
Following gene: 116492113
Centisome position: 20.46
GC content: 32.35
Gene sequence:
>408_bases ATGAAAATTAATATTACAGAGAATGCAAAAGATTATTTATTAAAGAAAGATATCGACGGTAAGCATATCTTCTTAGCACT TGATGATGGTTCTAGTAAATTTTCAAAATTAGGTGGATCATGTGCTATTGGTAATAAATTCCAACTAGTTATCTCATCTG TTCCTGATCAAGCTTACACGGATACAATTGAAAACGATGCGGATCTTAATCTTACTACTGGTAAAGAAGAGGCTAATTAT TTAGGTAATGGGCTAAAATTAGATTATAAAATGGGACTGCTTAAACTCAGTGATGATAGTAGCATCTTAGATGGTGCCGT TACTGTTCAAAATTACGAACCAACAGATGCCCAAACTAAAGACGAACTCGCTAAAGATATGAAAGATATTGGTAATAAAA TTTGCTAA
Upstream 100 bases:
>100_bases AACCAAATCCTGAGCACAATATTTAACTTCTGTTTTAAATTAAGGTAATATCAAGTCGTAGGAGCTCAGTGTTTGTTTTA CGCATAGGAGGAATTTTATT
Downstream 100 bases:
>100_bases TAAAAATAAAGAGCCTTAACTTCTTTTTCTGAAGTTAAGGTTCTTTTTTATGCTGCTCTAAACATCATATTGAGTTTCTT TAATTCCATCATTCATTAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 135; Mature: 135
Protein sequence:
>135_residues MKINITENAKDYLLKKDIDGKHIFLALDDGSSKFSKLGGSCAIGNKFQLVISSVPDQAYTDTIENDADLNLTTGKEEANY LGNGLKLDYKMGLLKLSDDSSILDGAVTVQNYEPTDAQTKDELAKDMKDIGNKIC
Sequences:
>Translated_135_residues MKINITENAKDYLLKKDIDGKHIFLALDDGSSKFSKLGGSCAIGNKFQLVISSVPDQAYTDTIENDADLNLTTGKEEANY LGNGLKLDYKMGLLKLSDDSSILDGAVTVQNYEPTDAQTKDELAKDMKDIGNKIC >Mature_135_residues MKINITENAKDYLLKKDIDGKHIFLALDDGSSKFSKLGGSCAIGNKFQLVISSVPDQAYTDTIENDADLNLTTGKEEANY LGNGLKLDYKMGLLKLSDDSSILDGAVTVQNYEPTDAQTKDELAKDMKDIGNKIC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14727; Mature: 14727
Theoretical pI: Translated: 4.42; Mature: 4.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKINITENAKDYLLKKDIDGKHIFLALDDGSSKFSKLGGSCAIGNKFQLVISSVPDQAYT CEEECCCCHHHHHEECCCCCCEEEEEEECCCHHHHHCCCCEEECCEEEEEEECCCCCHHH DTIENDADLNLTTGKEEANYLGNGLKLDYKMGLLKLSDDSSILDGAVTVQNYEPTDAQTK CCCCCCCCEEEECCCCHHHHCCCCEEEEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCH DELAKDMKDIGNKIC HHHHHHHHHHHHCCC >Mature Secondary Structure MKINITENAKDYLLKKDIDGKHIFLALDDGSSKFSKLGGSCAIGNKFQLVISSVPDQAYT CEEECCCCHHHHHEECCCCCCEEEEEEECCCHHHHHCCCCEEECCEEEEEEECCCCCHHH DTIENDADLNLTTGKEEANYLGNGLKLDYKMGLLKLSDDSSILDGAVTVQNYEPTDAQTK CCCCCCCCEEEECCCCHHHHCCCCEEEEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCH DELAKDMKDIGNKIC HHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA