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The map label for this gene is yydK [H]

Identifier: 116492084

GI number: 116492084

Start: 325915

End: 326610

Strand: Reverse

Name: yydK [H]

Synonym: PEPE_0280

Alternate gene names: 116492084

Gene position: 326610-325915 (Counterclockwise)

Preceding gene: 116492091

Following gene: 116492083

Centisome position: 17.82

GC content: 37.79

Gene sequence:

>696_bases
TTGTATACGAATATCGCAAATGATCTCATTGACAAAATTAAACATCACCTATTTGAAGAAAAATTACCAACTGAATACGA
ATTGATGCAAGAATATGATGTTAGTCGTAATACCATCCGTAAAGCAGTCGATATTCTTAGTCAAAAGGGACTCGTTCGCC
GTGTTCAAGGTAGTGGCTACTATATCAACGATTTTGGACCACGAGCTGATCAAACCATTAACCTAACCATGGGAGTTTCA
GAAGGCTTCAATCATCTCAAACTAACCTCACGCGTTATCACTTTCGATCGGGTGGTAGCTGATGAGGCTCTCGCAGCTGA
ATTTGGGTGCTTAGTCGGCGACGATTTGTATCGAGTAATTCGTTATCGTTTTCGTAATCGTCAAGCATATACTCTTGAAT
ATGCTTATTACGAACGCGAAGAGGTCCCCTTTTTACCAATCGAAGCTGCGCATGATTCCTTATTAGAATTCATTAGAAAT
GAGTATGGTGTATCCGTCGATACTAGCGACCAATACGTTGGAATTGAATCTTTCACTTCGGAAGCTGCTTTCATTACTGG
GCTTCCACAAGGCGATAAATATATTGTTTTATATCAATCACATTATCGTAAAAATAATGTGTTGTTTAATTTCTCTAAAA
CTTATTATTTAGACCGCAAAATTCGATTTTATTTCCACGCTTCTAATCAAAGCTAA

Upstream 100 bases:

>100_bases
AATTATAAAACGTAGGTACAAATTTTACAAGTACCAATAATTCAAATTCGTTAAAAAGTTATCAATCAGCGTTACTGATA
AGGAAAGAAGGCGTTCATCG

Downstream 100 bases:

>100_bases
ACCAACGGATTATTTTAAATTAAATTTTTAGTTGACAAATGAAAAGTATTTTAGATATACTCATGGAAGATTAATTCGAA
AGTTGGTAATACAAATGAGT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MYTNIANDLIDKIKHHLFEEKLPTEYELMQEYDVSRNTIRKAVDILSQKGLVRRVQGSGYYINDFGPRADQTINLTMGVS
EGFNHLKLTSRVITFDRVVADEALAAEFGCLVGDDLYRVIRYRFRNRQAYTLEYAYYEREEVPFLPIEAAHDSLLEFIRN
EYGVSVDTSDQYVGIESFTSEAAFITGLPQGDKYIVLYQSHYRKNNVLFNFSKTYYLDRKIRFYFHASNQS

Sequences:

>Translated_231_residues
MYTNIANDLIDKIKHHLFEEKLPTEYELMQEYDVSRNTIRKAVDILSQKGLVRRVQGSGYYINDFGPRADQTINLTMGVS
EGFNHLKLTSRVITFDRVVADEALAAEFGCLVGDDLYRVIRYRFRNRQAYTLEYAYYEREEVPFLPIEAAHDSLLEFIRN
EYGVSVDTSDQYVGIESFTSEAAFITGLPQGDKYIVLYQSHYRKNNVLFNFSKTYYLDRKIRFYFHASNQS
>Mature_231_residues
MYTNIANDLIDKIKHHLFEEKLPTEYELMQEYDVSRNTIRKAVDILSQKGLVRRVQGSGYYINDFGPRADQTINLTMGVS
EGFNHLKLTSRVITFDRVVADEALAAEFGCLVGDDLYRVIRYRFRNRQAYTLEYAYYEREEVPFLPIEAAHDSLLEFIRN
EYGVSVDTSDQYVGIESFTSEAAFITGLPQGDKYIVLYQSHYRKNNVLFNFSKTYYLDRKIRFYFHASNQS

Specific function: Possible Transcriptional Regulator Of The Succinyl-CoA- Synthetase Operon. Binds Specifically To The Farr Promoter And Exhibits Weak Binding To The Citrate Synthase And Lipoamide Dehydrogenase Promoters. Binding At The Farr Promoter Is Abolished By Long-

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786950, Length=235, Percent_Identity=23.8297872340426, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790118, Length=150, Percent_Identity=34, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27024; Mature: 27024

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYTNIANDLIDKIKHHLFEEKLPTEYELMQEYDVSRNTIRKAVDILSQKGLVRRVQGSGY
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEECCCCE
YINDFGPRADQTINLTMGVSEGFNHLKLTSRVITFDRVVADEALAAEFGCLVGDDLYRVI
EEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
RYRFRNRQAYTLEYAYYEREEVPFLPIEAAHDSLLEFIRNEYGVSVDTSDQYVGIESFTS
HHHHCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEECCCCCEECHHHHCC
EAAFITGLPQGDKYIVLYQSHYRKNNVLFNFSKTYYLDRKIRFYFHASNQS
CCEEEEECCCCCEEEEEEECCCCCCCEEEEECCEEEEEEEEEEEEEECCCC
>Mature Secondary Structure
MYTNIANDLIDKIKHHLFEEKLPTEYELMQEYDVSRNTIRKAVDILSQKGLVRRVQGSGY
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEECCCCE
YINDFGPRADQTINLTMGVSEGFNHLKLTSRVITFDRVVADEALAAEFGCLVGDDLYRVI
EEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
RYRFRNRQAYTLEYAYYEREEVPFLPIEAAHDSLLEFIRNEYGVSVDTSDQYVGIESFTS
HHHHCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEECCCCCEECHHHHCC
EAAFITGLPQGDKYIVLYQSHYRKNNVLFNFSKTYYLDRKIRFYFHASNQS
CCEEEEECCCCCEEEEEEECCCCCCCEEEEECCEEEEEEEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]