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The map label for this gene is yisR [H]

Identifier: 116491968

GI number: 116491968

Start: 181775

End: 182623

Strand: Reverse

Name: yisR [H]

Synonym: PEPE_0154

Alternate gene names: 116491968

Gene position: 182623-181775 (Counterclockwise)

Preceding gene: 116491972

Following gene: 116491967

Centisome position: 9.97

GC content: 28.15

Gene sequence:

>849_bases
ATGGATTTTTATACTATTCAATTTGATGATCTTGCCAACTTTGAATCAGCTGGAATTTTCGTCAATAATAAAAAATGGAA
ACACAGTCATAGAATTTTAAGTAGTTTCGAAATAATCGTTATGATTGAGGGTGTCCTCCCTATTCAAGTTAGTAACACTC
AATATCGAGTTAAACCTAATAAACTGTTAATAATCCCACCGAGTGCAGAACATTTTGGCTTTGAATTTACAACCAGCGAT
ATTAAGTTCATTTGGATACACTTTAATTGCTCAAAATTTAAAATTAACGATGAAAAATCATTATTCCTTTCAAATATAGA
GAACAGTTCTATAATTTTACCTAACTATTCAAACAAGTTAGATGTCCAAAGAATTATATTAATGTCAAATCACTTATTAG
ATATTACACAAGAAAACGTAAATTCTATCTATTTAAATTTATTTTTAAATAGCACTCTCCATGAGATAAATTACCAAACA
CAGAAAATTCTCAAGGAAAGACAATTATCTAATCTATACTTGCAGCCAGTTAGAGAGTTTATAAGAATTAACTGCTTTGA
AGATATAGATTTAGGTAGCATAGCTACACACTTTAACTACAATAAAAGTTACTTATCTAGAAAATACAAAAAAGTTATGG
GCATTGGCATTAAACAACAAATTAATAAATTTCGTATATCACGTGCAGAATACCTACTCAGTAATACTAGTCTGACCGTT
CAAGAAATAAGTAGTCAAATTGGATTTAATGATGAAAAATATTTTATGAGACTTTTCAGAAAAAATACTAATAGTACACC
ATCAGAATATCGAAAATTGTATAGCCAACGTCATTTCAATAAAGAGTAA

Upstream 100 bases:

>100_bases
GCGCTTTCTTATAGATTATAATAGAATGTTACAATAGAAATGTCGGTAGTTAATAAAAACAAAAAGTGGACTATTTTTAC
TTGAAAGGTGTATTAGTAAT

Downstream 100 bases:

>100_bases
TCTATAAAAGAATTAGTATTTACTCCATTAACCCATTTTTTTGTTAATCATTTAATTATCTTACTTTCCCAGTTGCAATC
GCTTGCAACTCGCCCCTATC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MDFYTIQFDDLANFESAGIFVNNKKWKHSHRILSSFEIIVMIEGVLPIQVSNTQYRVKPNKLLIIPPSAEHFGFEFTTSD
IKFIWIHFNCSKFKINDEKSLFLSNIENSSIILPNYSNKLDVQRIILMSNHLLDITQENVNSIYLNLFLNSTLHEINYQT
QKILKERQLSNLYLQPVREFIRINCFEDIDLGSIATHFNYNKSYLSRKYKKVMGIGIKQQINKFRISRAEYLLSNTSLTV
QEISSQIGFNDEKYFMRLFRKNTNSTPSEYRKLYSQRHFNKE

Sequences:

>Translated_282_residues
MDFYTIQFDDLANFESAGIFVNNKKWKHSHRILSSFEIIVMIEGVLPIQVSNTQYRVKPNKLLIIPPSAEHFGFEFTTSD
IKFIWIHFNCSKFKINDEKSLFLSNIENSSIILPNYSNKLDVQRIILMSNHLLDITQENVNSIYLNLFLNSTLHEINYQT
QKILKERQLSNLYLQPVREFIRINCFEDIDLGSIATHFNYNKSYLSRKYKKVMGIGIKQQINKFRISRAEYLLSNTSLTV
QEISSQIGFNDEKYFMRLFRKNTNSTPSEYRKLYSQRHFNKE
>Mature_282_residues
MDFYTIQFDDLANFESAGIFVNNKKWKHSHRILSSFEIIVMIEGVLPIQVSNTQYRVKPNKLLIIPPSAEHFGFEFTTSD
IKFIWIHFNCSKFKINDEKSLFLSNIENSSIILPNYSNKLDVQRIILMSNHLLDITQENVNSIYLNLFLNSTLHEINYQT
QKILKERQLSNLYLQPVREFIRINCFEDIDLGSIATHFNYNKSYLSRKYKKVMGIGIKQQINKFRISRAEYLLSNTSLTV
QEISSQIGFNDEKYFMRLFRKNTNSTPSEYRKLYSQRHFNKE

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=243, Percent_Identity=23.8683127572016, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790391, Length=105, Percent_Identity=36.1904761904762, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI171474011, Length=73, Percent_Identity=35.6164383561644, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787987, Length=271, Percent_Identity=20.2952029520295, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33387; Mature: 33387

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFYTIQFDDLANFESAGIFVNNKKWKHSHRILSSFEIIVMIEGVLPIQVSNTQYRVKPN
CCEEEEEECCCCCCCCCCEEEECCCCHHHHHHHHCEEEEEEEECEEEEEECCCEEEECCC
KLLIIPPSAEHFGFEFTTSDIKFIWIHFNCSKFKINDEKSLFLSNIENSSIILPNYSNKL
EEEEECCCCHHCCEEEECCCEEEEEEEEECEEEEECCCCCEEEECCCCCEEECCCCCCCC
DVQRIILMSNHLLDITQENVNSIYLNLFLNSTLHEINYQTQKILKERQLSNLYLQPVREF
HHHHHEEHHCCEEEEEHHCCCEEEEEEEEHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
IRINCFEDIDLGSIATHFNYNKSYLSRKYKKVMGIGIKQQINKFRISRAEYLLSNTSLTV
HEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEH
QEISSQIGFNDEKYFMRLFRKNTNSTPSEYRKLYSQRHFNKE
HHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDFYTIQFDDLANFESAGIFVNNKKWKHSHRILSSFEIIVMIEGVLPIQVSNTQYRVKPN
CCEEEEEECCCCCCCCCCEEEECCCCHHHHHHHHCEEEEEEEECEEEEEECCCEEEECCC
KLLIIPPSAEHFGFEFTTSDIKFIWIHFNCSKFKINDEKSLFLSNIENSSIILPNYSNKL
EEEEECCCCHHCCEEEECCCEEEEEEEEECEEEEECCCCCEEEECCCCCEEECCCCCCCC
DVQRIILMSNHLLDITQENVNSIYLNLFLNSTLHEINYQTQKILKERQLSNLYLQPVREF
HHHHHEEHHCCEEEEEHHCCCEEEEEEEEHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
IRINCFEDIDLGSIATHFNYNKSYLSRKYKKVMGIGIKQQINKFRISRAEYLLSNTSLTV
HEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEH
QEISSQIGFNDEKYFMRLFRKNTNSTPSEYRKLYSQRHFNKE
HHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353932; 9384377; 8407808 [H]