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The map label for this gene is farR [C]

Identifier: 116491972

GI number: 116491972

Start: 187926

End: 188645

Strand: Reverse

Name: farR [C]

Synonym: PEPE_0158

Alternate gene names: 116491972

Gene position: 188645-187926 (Counterclockwise)

Preceding gene: 116491973

Following gene: 116491968

Centisome position: 10.3

GC content: 32.08

Gene sequence:

>720_bases
ATGCATCAACCAGCAAAATACGTTAAAGTATACAACAAAATACTAAAAATGATTGAGCAAGGCCAATTAATTTCCGGTGA
AAAAATTCCATCTGAAGAGATTCTTACTAAAGAATTTGATGTTAGCCGTGTTACCCTTAGAACAGCTTTGTCTCTGTTAA
AAGAAGATGGTTTTATCACTAGTATTCACGGAAAAGGCCATTATATTAGTAAAAATAATTCTTATAGTAATCAACACCTA
GAAAATTTTATTTCGCCTATTTTAACTACCTTAACAGTTCCTATAGAAAGCCGTGAGACATACTATCATAAAAATACTTC
TAGTGCTTTTACTGATCAATTATTTGGTGTACAAAATCGCCCTTATCTTACTCTTAATGTTTGGTACAAAAATGGCATAA
ATAACATTGCTAATAACTTAGCAATCGTAATGCCAGAAACTATAGATAAATTTTCTGTTAACCTTAATAATCCCAAAAGT
ATTGTGCAGTTTCTAGAAAATAATGTTTACAAGGTGGCTTCTAGTTCCACTTTGACATTATCCGTCTCAGAAAGACATCC
TTCTACGTTTCGCCGTAATTTTATTAATGACTCTCCCCTTATGTTAATTACAGAAGACATATTCGATATACACGGTGATC
GATTAATTCAAAACAAGTATTACATACCAAGTACTTTATTTCGCACAGAAATGGTGCGTCACCCAAATACTCTCTCATAA

Upstream 100 bases:

>100_bases
AGCTAATTAATCCGGATACCAGTCATTTGATGATAATTGGTATTCGGATTAATTTTTAATTCACATTTAAATCTAAAAGA
TAGGGAGAGTTAACCGTAAA

Downstream 100 bases:

>100_bases
ATCACTAAAAACGCTTAAAAAATACTCCCAATACTAGTTAACTGATGAAAAAAACATTTAAGTATTGGGATTTTTTTCGT
ACTAGGATTATAACTGACCT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulatory Protein; Transcriptional Regulator GntR Family; GntR Family Transcriptional Regulator; Transcription Regulator; Regulatory Protein GntR HTH

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MHQPAKYVKVYNKILKMIEQGQLISGEKIPSEEILTKEFDVSRVTLRTALSLLKEDGFITSIHGKGHYISKNNSYSNQHL
ENFISPILTTLTVPIESRETYYHKNTSSAFTDQLFGVQNRPYLTLNVWYKNGINNIANNLAIVMPETIDKFSVNLNNPKS
IVQFLENNVYKVASSSTLTLSVSERHPSTFRRNFINDSPLMLITEDIFDIHGDRLIQNKYYIPSTLFRTEMVRHPNTLS

Sequences:

>Translated_239_residues
MHQPAKYVKVYNKILKMIEQGQLISGEKIPSEEILTKEFDVSRVTLRTALSLLKEDGFITSIHGKGHYISKNNSYSNQHL
ENFISPILTTLTVPIESRETYYHKNTSSAFTDQLFGVQNRPYLTLNVWYKNGINNIANNLAIVMPETIDKFSVNLNNPKS
IVQFLENNVYKVASSSTLTLSVSERHPSTFRRNFINDSPLMLITEDIFDIHGDRLIQNKYYIPSTLFRTEMVRHPNTLS
>Mature_239_residues
MHQPAKYVKVYNKILKMIEQGQLISGEKIPSEEILTKEFDVSRVTLRTALSLLKEDGFITSIHGKGHYISKNNSYSNQHL
ENFISPILTTLTVPIESRETYYHKNTSSAFTDQLFGVQNRPYLTLNVWYKNGINNIANNLAIVMPETIDKFSVNLNNPKS
IVQFLENNVYKVASSSTLTLSVSERHPSTFRRNFINDSPLMLITEDIFDIHGDRLIQNKYYIPSTLFRTEMVRHPNTLS

Specific function: Possible Transcriptional Regulator Of The Succinyl-CoA- Synthetase Operon. Binds Specifically To The Farr Promoter And Exhibits Weak Binding To The Citrate Synthase And Lipoamide Dehydrogenase Promoters. Binding At The Farr Promoter Is Abolished By Long-

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27475; Mature: 27475

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHQPAKYVKVYNKILKMIEQGQLISGEKIPSEEILTKEFDVSRVTLRTALSLLKEDGFIT
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCEE
SIHGKGHYISKNNSYSNQHLENFISPILTTLTVPIESRETYYHKNTSSAFTDQLFGVQNR
EECCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHCCCCC
PYLTLNVWYKNGINNIANNLAIVMPETIDKFSVNLNNPKSIVQFLENNVYKVASSSTLTL
CEEEEEEEECCCHHHHHCCEEEEECCCCCEEEECCCCHHHHHHHHHCCEEEEECCCEEEE
SVSERHPSTFRRNFINDSPLMLITEDIFDIHGDRLIQNKYYIPSTLFRTEMVRHPNTLS
EECCCCCHHHHHHHCCCCCEEEEEHHHHHCCCCEEECCCCCCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MHQPAKYVKVYNKILKMIEQGQLISGEKIPSEEILTKEFDVSRVTLRTALSLLKEDGFIT
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCEE
SIHGKGHYISKNNSYSNQHLENFISPILTTLTVPIESRETYYHKNTSSAFTDQLFGVQNR
EECCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHCCCCC
PYLTLNVWYKNGINNIANNLAIVMPETIDKFSVNLNNPKSIVQFLENNVYKVASSSTLTL
CEEEEEEEECCCHHHHHCCEEEEECCCCCEEEECCCCHHHHHHHHHCCEEEEECCCEEEE
SVSERHPSTFRRNFINDSPLMLITEDIFDIHGDRLIQNKYYIPSTLFRTEMVRHPNTLS
EECCCCCHHHHHHHCCCCCEEEEEHHHHHCCCCEEECCCCCCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA