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The map label for this gene is 116491928

Identifier: 116491928

GI number: 116491928

Start: 125793

End: 126374

Strand: Direct

Name: 116491928

Synonym: PEPE_0114

Alternate gene names: NA

Gene position: 125793-126374 (Clockwise)

Preceding gene: 116491927

Following gene: 116491929

Centisome position: 6.86

GC content: 42.78

Gene sequence:

>582_bases
ATGGAAAATAATGAAAGAACAATTAAACTAGGATTAGAACACTTATTAGAAGACGGCCACGAAAAAATCGTGTACGGCGC
ATTAAAAAAATTACACATTAACACTCGCTCAGTCGAATTTGACGATTTTTTGCAGGAGGCTCGTTTGGCATACGCTAAAG
CATACGTACGCTTCCCACAGGACTTGCAGGAAAACGATCGACAGTTCCACGGCTACGCCTATCAGGCGGTTTACTGGCGA
GTGCTGGACATCATTCGTTACCGACAAAAGGAAAAAGACGTGCAAGCTGTAGAACTAGAAGACGATGAGAAACAAGAAGC
CCGATGGGGGCATAAACCATCGTGGGTAGAACGCATAATGTCTGATCAACTTTTCCAAGAGGTTTACAAACTTTGCACGC
CAGCTGAAAAACGGTTCTTGAAAGCTTGTTATGTGGAACAACTTTCGGGAGCAGAAATTGCGCGTAAAGAAAAAGTGAGT
CGTCAGAGCATTTATAAGTGGCGAAAAGCGGTCGGAAAAAAGGCCTTATATGTTATCGGTAAAGGTGAGGATATGGACTA
TACCAAAGCACTGAAAAAATAG

Upstream 100 bases:

>100_bases
GTTTTGGACCAAAAACTACACCTTAAAAACCGTTTTTGACTTCTGTAGTATTAATAATTGACCAAGGGCCCTTGGATCTA
CACTTTAGGAGATTCAAGAA

Downstream 100 bases:

>100_bases
GACAGGTTAGTAAAAATCACGGGGGTAAATTTTACCCGTGGTTTTTTGGTTAGGTAAAATAAATGACCGATAAATTCCTA
CGGCAAACGCTTGCAAAATA

Product: RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24-like

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MENNERTIKLGLEHLLEDGHEKIVYGALKKLHINTRSVEFDDFLQEARLAYAKAYVRFPQDLQENDRQFHGYAYQAVYWR
VLDIIRYRQKEKDVQAVELEDDEKQEARWGHKPSWVERIMSDQLFQEVYKLCTPAEKRFLKACYVEQLSGAEIARKEKVS
RQSIYKWRKAVGKKALYVIGKGEDMDYTKALKK

Sequences:

>Translated_193_residues
MENNERTIKLGLEHLLEDGHEKIVYGALKKLHINTRSVEFDDFLQEARLAYAKAYVRFPQDLQENDRQFHGYAYQAVYWR
VLDIIRYRQKEKDVQAVELEDDEKQEARWGHKPSWVERIMSDQLFQEVYKLCTPAEKRFLKACYVEQLSGAEIARKEKVS
RQSIYKWRKAVGKKALYVIGKGEDMDYTKALKK
>Mature_193_residues
MENNERTIKLGLEHLLEDGHEKIVYGALKKLHINTRSVEFDDFLQEARLAYAKAYVRFPQDLQENDRQFHGYAYQAVYWR
VLDIIRYRQKEKDVQAVELEDDEKQEARWGHKPSWVERIMSDQLFQEVYKLCTPAEKRFLKACYVEQLSGAEIARKEKVS
RQSIYKWRKAVGKKALYVIGKGEDMDYTKALKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22953; Mature: 22953

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENNERTIKLGLEHLLEDGHEKIVYGALKKLHINTRSVEFDDFLQEARLAYAKAYVRFPQ
CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCH
DLQENDRQFHGYAYQAVYWRVLDIIRYRQKEKDVQAVELEDDEKQEARWGHKPSWVERIM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHCCCCHHHHHHHH
SDQLFQEVYKLCTPAEKRFLKACYVEQLSGAEIARKEKVSRQSIYKWRKAVGKKALYVIG
HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
KGEDMDYTKALKK
CCCCCHHHHHHCC
>Mature Secondary Structure
MENNERTIKLGLEHLLEDGHEKIVYGALKKLHINTRSVEFDDFLQEARLAYAKAYVRFPQ
CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCH
DLQENDRQFHGYAYQAVYWRVLDIIRYRQKEKDVQAVELEDDEKQEARWGHKPSWVERIM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHCCCCHHHHHHHH
SDQLFQEVYKLCTPAEKRFLKACYVEQLSGAEIARKEKVSRQSIYKWRKAVGKKALYVIG
HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
KGEDMDYTKALKK
CCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA