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The map label for this gene is yfeT [C]

Identifier: 116491912

GI number: 116491912

Start: 103637

End: 104524

Strand: Reverse

Name: yfeT [C]

Synonym: PEPE_0094

Alternate gene names: 116491912

Gene position: 104524-103637 (Counterclockwise)

Preceding gene: 116491925

Following gene: 116491911

Centisome position: 5.7

GC content: 36.71

Gene sequence:

>888_bases
ATGCTATTAATCGACAAGCTGAGTAACCACGAAAACTTTACCAACACCGAGCAACGAATAGCCGATTATATTCTTAAAAA
CATCACCGACATTCCGCCGATGAATATTGATAAACTTTCTAAAGTCACTTATACCTCGCATTCAGCTGTGGTCCGATTGA
CTAAAAAATTAGGTTTTGAAGGTTTTAAAGATTTTAAAGTAGCAATTTCAGAGGCTGTGTACAGTCAAACCACCAACATG
AATTCTGTTGATGCTAACTTTCCGTTTGATTCTAACGATTCTGTCTCTACCATTTCAAAGAAAGTCGCTGAACTCTCTGT
TGAAAGTATTCAAAGAACATTTGCACAGTTAGACGAACGACTGATTGAAGAAGCAGCCAATACGATTGCCAAATCGGAAC
GCATTTTCCTATTTGCGCAGGGCGATTCTCAGATTCGAGCCCGTAGCTTCCAAAATAAATTGGTTAAATTAAATCGTTTC
GCCATTCTGGGTGAAGAATACAGTGACGAAGACTGGACGGCTGCCAACTTAACCAAAAAAGATTGTGCTATTTTCATCAG
TTATGGTGGTCGTATTTCACAATATGAACGCATGCTGACTCATTTTTCCGAGAATAAAATTCCTTCTGTAGTTCTGACCG
GCAATCAAAAATCGCCCCTCATTCGTTTGGCGCAAACTGCGATCGTCACTACTCAAAATGAATATGACTTTTTAAAAATT
AGTACATTTTCTTCTCAGATCACTTTTGAATACTTATTGGATACAATTTTTTCTGTTATTTATGCTAAGGAGTACCAACA
AAATATTATTAATTTAAAAAATAAGTTTAACTTGATTCAACGTGGTACTCTTTCTGAAGGTTTAGCTAAGGAACATGACT
CAAAGTAG

Upstream 100 bases:

>100_bases
CTTGTACTGCTTATTCCTAAAAAAAATTACCAAAATCATGCTGAAAATATTTTTTAAGCTATACTGATTATGAATAAGCC
AAAAGGAAGTGAGCTATCAT

Downstream 100 bases:

>100_bases
TGCGTAAAATGATTCAAAAGACTGTTCTAAAGAGAGAACAAGTACTCATTTCTATACAAATAATTACGTCCAAAGTCCAA
AAAATACGCCTGGTAGTTTC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MLLIDKLSNHENFTNTEQRIADYILKNITDIPPMNIDKLSKVTYTSHSAVVRLTKKLGFEGFKDFKVAISEAVYSQTTNM
NSVDANFPFDSNDSVSTISKKVAELSVESIQRTFAQLDERLIEEAANTIAKSERIFLFAQGDSQIRARSFQNKLVKLNRF
AILGEEYSDEDWTAANLTKKDCAIFISYGGRISQYERMLTHFSENKIPSVVLTGNQKSPLIRLAQTAIVTTQNEYDFLKI
STFSSQITFEYLLDTIFSVIYAKEYQQNIINLKNKFNLIQRGTLSEGLAKEHDSK

Sequences:

>Translated_295_residues
MLLIDKLSNHENFTNTEQRIADYILKNITDIPPMNIDKLSKVTYTSHSAVVRLTKKLGFEGFKDFKVAISEAVYSQTTNM
NSVDANFPFDSNDSVSTISKKVAELSVESIQRTFAQLDERLIEEAANTIAKSERIFLFAQGDSQIRARSFQNKLVKLNRF
AILGEEYSDEDWTAANLTKKDCAIFISYGGRISQYERMLTHFSENKIPSVVLTGNQKSPLIRLAQTAIVTTQNEYDFLKI
STFSSQITFEYLLDTIFSVIYAKEYQQNIINLKNKFNLIQRGTLSEGLAKEHDSK
>Mature_295_residues
MLLIDKLSNHENFTNTEQRIADYILKNITDIPPMNIDKLSKVTYTSHSAVVRLTKKLGFEGFKDFKVAISEAVYSQTTNM
NSVDANFPFDSNDSVSTISKKVAELSVESIQRTFAQLDERLIEEAANTIAKSERIFLFAQGDSQIRARSFQNKLVKLNRF
AILGEEYSDEDWTAANLTKKDCAIFISYGGRISQYERMLTHFSENKIPSVVLTGNQKSPLIRLAQTAIVTTQNEYDFLKI
STFSSQITFEYLLDTIFSVIYAKEYQQNIINLKNKFNLIQRGTLSEGLAKEHDSK

Specific function: Unknown

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1788767, Length=263, Percent_Identity=28.1368821292776, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788159, Length=276, Percent_Identity=21.3768115942029, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87082369, Length=271, Percent_Identity=23.6162361623616, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 33580; Mature: 33580

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLIDKLSNHENFTNTEQRIADYILKNITDIPPMNIDKLSKVTYTSHSAVVRLTKKLGFE
CEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHEECCHHHHHHHHHHHCCC
GFKDFKVAISEAVYSQTTNMNSVDANFPFDSNDSVSTISKKVAELSVESIQRTFAQLDER
CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LIEEAANTIAKSERIFLFAQGDSQIRARSFQNKLVKLNRFAILGEEYSDEDWTAANLTKK
HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCC
DCAIFISYGGRISQYERMLTHFSENKIPSVVLTGNQKSPLIRLAQTAIVTTQNEYDFLKI
CEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHEEECCCCCEEEE
STFSSQITFEYLLDTIFSVIYAKEYQQNIINLKNKFNLIQRGTLSEGLAKEHDSK
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC
>Mature Secondary Structure
MLLIDKLSNHENFTNTEQRIADYILKNITDIPPMNIDKLSKVTYTSHSAVVRLTKKLGFE
CEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHEECCHHHHHHHHHHHCCC
GFKDFKVAISEAVYSQTTNMNSVDANFPFDSNDSVSTISKKVAELSVESIQRTFAQLDER
CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LIEEAANTIAKSERIFLFAQGDSQIRARSFQNKLVKLNRFAILGEEYSDEDWTAANLTKK
HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCC
DCAIFISYGGRISQYERMLTHFSENKIPSVVLTGNQKSPLIRLAQTAIVTTQNEYDFLKI
CEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHEEECCCCCEEEE
STFSSQITFEYLLDTIFSVIYAKEYQQNIINLKNKFNLIQRGTLSEGLAKEHDSK
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]