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The map label for this gene is hirJM79 [H]

Identifier: 116491900

GI number: 116491900

Start: 90015

End: 90197

Strand: Reverse

Name: hirJM79 [H]

Synonym: PEPE_0082

Alternate gene names: 116491900

Gene position: 90197-90015 (Counterclockwise)

Preceding gene: 116491904

Following gene: 116491899

Centisome position: 4.92

GC content: 40.44

Gene sequence:

>183_bases
ATGACTGAAATTAAAGTACTAAACGATAAGGAACTAAAAAATGTCGTAGGAGGAAAGTATTACGGTAACGGAGTGCATTG
TGGTAAAAAGACTTGCTATGTGGACTGGGGACAAGCTACAGCTAGCATTGGAAAAATTATAGTGAACGGATGGACACAAC
ACGGGCCTTGGGCACATAGATAA

Upstream 100 bases:

>100_bases
AAACACTACTTTAGGAGTGATTGAACTTTTATCTAACATCTTCGTATAAAATACAGGTTGTTTAAAATAAATAAGCTAAA
TTTTTAAGGAGGATTCTGAG

Downstream 100 bases:

>100_bases
CGGGAGACGTTATTATGAAGAAAGCAGACTTAATTAATGCAATTGATGAAACCTATAAAGATGAAGAAGTTAAAAAAAAT
CCCGATATAAGAGAATTTTT

Product: prebacteriocin

Products: NA

Alternate protein names: Class II sec-dependent bacteriocin [H]

Number of amino acids: Translated: 60; Mature: 59

Protein sequence:

>60_residues
MTEIKVLNDKELKNVVGGKYYGNGVHCGKKTCYVDWGQATASIGKIIVNGWTQHGPWAHR

Sequences:

>Translated_60_residues
MTEIKVLNDKELKNVVGGKYYGNGVHCGKKTCYVDWGQATASIGKIIVNGWTQHGPWAHR
>Mature_59_residues
TEIKVLNDKELKNVVGGKYYGNGVHCGKKTCYVDWGQATASIGKIIVNGWTQHGPWAHR

Specific function: Bacteriocin with antibacterial activity against the Gram-positive Listeria, Enterococcus, Propionibacterium, Staphylococcus and some strains of Clostridium, Lactobacillus and Pediococcus. Lacks antibacterial activity against Gram-negative bacteria [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacteriocin class IIA/YGNGV family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002633
- ProDom:   PD004452 [H]

Pfam domain/function: PF01721 Bacteriocin_II [H]

EC number: NA

Molecular weight: Translated: 6659; Mature: 6528

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEIKVLNDKELKNVVGGKYYGNGVHCGKKTCYVDWGQATASIGKIIVNGWTQHGPWAHR
CCCEEECCCHHHHHHCCCCCCCCCEECCCEEEEEECCCCHHHHCEEEECCCCCCCCCCCC
>Mature Secondary Structure 
TEIKVLNDKELKNVVGGKYYGNGVHCGKKTCYVDWGQATASIGKIIVNGWTQHGPWAHR
CCEEECCCHHHHHHCCCCCCCCCEECCCEEEEEECCCCHHHHCEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA