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The map label for this gene is licT [H]

Identifier: 116491896

GI number: 116491896

Start: 86273

End: 87103

Strand: Direct

Name: licT [H]

Synonym: PEPE_0078

Alternate gene names: 116491896

Gene position: 86273-87103 (Clockwise)

Preceding gene: 116491895

Following gene: 116491897

Centisome position: 4.71

GC content: 32.01

Gene sequence:

>831_bases
ATGCTGGTGGTGAAAAAAATAAATAATAATGTGGTGGTCTGTTTGGATCGGAATGGAGCACAGCTAGTTGCTTTTGGAAA
AGGGCTGGGTTTTCCAAAAGTACCATATGAGCTGACTGATATGAACAAAGTGAGTATGACATTTTATAAATTAAATTATC
AGTATTATCAATTACTAAAAGAAATTCCGACCGAAATTTTTGATGTAAGTGCCGCAATTACCGATAAGGCTCAAAAACTT
ATTTTGAGAAATCTTAATCCAAACATGATTTTTAGTTTAGCAGATCATATTAATTTTGCTATTACGAGATTAACTAAGTA
CCAAGGAATGGCACTCCCTTTTTCATATGATGTAGAGCAATTGTATCCTCAAGAAACAGCTGTGGGTTACTATGCTGTGA
AGCTAATTAACTCGCGTTTAGATGTTGAATTACCAATCTCGGAGGTCACAGCAATAGCCATGCATTTCGTAAATTCTGAA
ACAACGGAATTAGTAACTAACCCAAAGGTAACAGCAGATGATGAAATTATAAAGATAGCTACAAAAATTATCGAACGAGA
ATTTGAAATAACTATTAGCAAAAATGAATTTAGTTACAACAGATTTATTATGCATTTACGATACTACATTAAACGCTTGA
ATGAACACCAACAAATTTCTAAGAATGATAATTTGAAATTGTTTAATGTGATGAAGCTAGATGAACCAAGAATTTATCTG
GCAGCTAAGCAAATTGCAAACTACATTGATGATCAACTTGGAACTGTCAGTAATGATGATGAATTATATTATTTGATGAT
TTATGTTAAACGCATTGTTAATAAAGGTTAA

Upstream 100 bases:

>100_bases
ATACCGCTTGGCAGCAAACTTAATCAACAACTTGCTTTGGGTACATTGGTTCTCAAACAAGCGTAAGTAATATTTAAGCA
GGTAAGGAGGTGTAAATGAG

Downstream 100 bases:

>100_bases
TTATCATTCAGTGGAGGCACTAGGATATGAAAAATAAAAATCAATATTATGAACAAGTAGCAAAAGATTTGTTATCAGCA
GTCGGGGGGAGTGCTAATAT

Product: beta-glucoside operon antiterminator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MLVVKKINNNVVVCLDRNGAQLVAFGKGLGFPKVPYELTDMNKVSMTFYKLNYQYYQLLKEIPTEIFDVSAAITDKAQKL
ILRNLNPNMIFSLADHINFAITRLTKYQGMALPFSYDVEQLYPQETAVGYYAVKLINSRLDVELPISEVTAIAMHFVNSE
TTELVTNPKVTADDEIIKIATKIIEREFEITISKNEFSYNRFIMHLRYYIKRLNEHQQISKNDNLKLFNVMKLDEPRIYL
AAKQIANYIDDQLGTVSNDDELYYLMIYVKRIVNKG

Sequences:

>Translated_276_residues
MLVVKKINNNVVVCLDRNGAQLVAFGKGLGFPKVPYELTDMNKVSMTFYKLNYQYYQLLKEIPTEIFDVSAAITDKAQKL
ILRNLNPNMIFSLADHINFAITRLTKYQGMALPFSYDVEQLYPQETAVGYYAVKLINSRLDVELPISEVTAIAMHFVNSE
TTELVTNPKVTADDEIIKIATKIIEREFEITISKNEFSYNRFIMHLRYYIKRLNEHQQISKNDNLKLFNVMKLDEPRIYL
AAKQIANYIDDQLGTVSNDDELYYLMIYVKRIVNKG
>Mature_276_residues
MLVVKKINNNVVVCLDRNGAQLVAFGKGLGFPKVPYELTDMNKVSMTFYKLNYQYYQLLKEIPTEIFDVSAAITDKAQKL
ILRNLNPNMIFSLADHINFAITRLTKYQGMALPFSYDVEQLYPQETAVGYYAVKLINSRLDVELPISEVTAIAMHFVNSE
TTELVTNPKVTADDEIIKIATKIIEREFEITISKNEFSYNRFIMHLRYYIKRLNEHQQISKNDNLKLFNVMKLDEPRIYL
AAKQIANYIDDQLGTVSNDDELYYLMIYVKRIVNKG

Specific function: Mediates positive regulation of the glucanase operon (licST) by functioning as an antiterminator factor of transcription. Prevents termination at terminator lic-t [H]

COG id: COG3711

COG function: function code K; Transcriptional antiterminator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PRD domains [H]

Homologues:

Organism=Escherichia coli, GI1790160, Length=276, Percent_Identity=29.7101449275362, Blast_Score=131, Evalue=4e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004341
- InterPro:   IPR011608
- InterPro:   IPR001550 [H]

Pfam domain/function: PF03123 CAT_RBD; PF00874 PRD [H]

EC number: NA

Molecular weight: Translated: 31983; Mature: 31983

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVVKKINNNVVVCLDRNGAQLVAFGKGLGFPKVPYELTDMNKVSMTFYKLNYQYYQLLK
CEEEEEECCCEEEEECCCCCEEEEEECCCCCCCCCEEECCCCEEEEEEEEECHHHHHHHH
EIPTEIFDVSAAITDKAQKLILRNLNPNMIFSLADHINFAITRLTKYQGMALPFSYDVEQ
HCCHHHHHHHHHHHHHHHHHHHHCCCCHHEEHHHHHHHHHHHHHHHHCCEECCCCCCHHH
LYPQETAVGYYAVKLINSRLDVELPISEVTAIAMHFVNSETTELVTNPKVTADDEIIKIA
HCCCHHHHHHHHEEEHHCCCCEEECHHHHHHHHHHHHCCCCHHEECCCCCCCCHHHHHHH
TKIIEREFEITISKNEFSYNRFIMHLRYYIKRLNEHQQISKNDNLKLFNVMKLDEPRIYL
HHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEE
AAKQIANYIDDQLGTVSNDDELYYLMIYVKRIVNKG
EHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHCCC
>Mature Secondary Structure
MLVVKKINNNVVVCLDRNGAQLVAFGKGLGFPKVPYELTDMNKVSMTFYKLNYQYYQLLK
CEEEEEECCCEEEEECCCCCEEEEEECCCCCCCCCEEECCCCEEEEEEEEECHHHHHHHH
EIPTEIFDVSAAITDKAQKLILRNLNPNMIFSLADHINFAITRLTKYQGMALPFSYDVEQ
HCCHHHHHHHHHHHHHHHHHHHHCCCCHHEEHHHHHHHHHHHHHHHHCCEECCCCCCHHH
LYPQETAVGYYAVKLINSRLDVELPISEVTAIAMHFVNSETTELVTNPKVTADDEIIKIA
HCCCHHHHHHHHEEEHHCCCCEEECHHHHHHHHHHHHCCCCHHEECCCCCCCCHHHHHHH
TKIIEREFEITISKNEFSYNRFIMHLRYYIKRLNEHQQISKNDNLKLFNVMKLDEPRIYL
HHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEE
AAKQIANYIDDQLGTVSNDDELYYLMIYVKRIVNKG
EHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8606172; 8969509; 9384377; 6087283 [H]