| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
Click here to switch to the map view.
The map label for this gene is 116491882
Identifier: 116491882
GI number: 116491882
Start: 67597
End: 69249
Strand: Direct
Name: 116491882
Synonym: PEPE_0064
Alternate gene names: NA
Gene position: 67597-69249 (Clockwise)
Preceding gene: 116491881
Following gene: 116491883
Centisome position: 3.69
GC content: 36.96
Gene sequence:
>1653_bases ATGTTTTATATTATGCCGGCCTGGGAGAATGAAGTCAGCGAATTAAATCGGGATTTACTAAAAAATCTGACTAATGTATT CGTTGGTGGTAAAAAAAGCGTGAAGCTCGCGGTGTTAAATTTTTTACCCAACCTAAGATATCTTTTACATGTCAATGGAT TAACTAATTATGAATACTGGAACATTTGGGATGCGATTTTGGGGATAGAAAGAGTTGATGGAATGCCACTAGGACCAGAA GCTTTAGACTTACCTCAAGGGGTTCGTTTAATCAATGCTATGACTTCAATGGATGCCTATGAGGGATCTAAATTATATGC CCGAATTATTAGAAGTTCTGAAGGATATCTTAGTGAGGTTCAGTTTATGAATCCTCAAAATCGCCATACCGATGTTTATG ACGATCGTGGATTCAAAGTATGCACTAATTATTATGAAAATGAAGAAGTAGTCCGACAAGAATGGTTCAATGAGTGCAAT CAACTAATTGTTCGTTATGAACCTAAGGCCAAGGTGGCTGTTCAAATTCTAGGTAATTATTCTAATTTCGAGAAAAGGCA GTATAAAACTTTAAACGAACTATTAATGGAATTTGTAAATTCATTTTTTGAAGAGCACTTTGATCCCACTCAGGACCGGT TAATTGCTAGTACTAACTTAAAGATTAGGCCGCTGATGGTCGAGATTCAAAACCGGTTACCAGTAACTTATTTATTGGAC CATCTGGGCCCTATGGATACTACCACCGTGGAAACATTGCAACCTCAAATTCAGGGAGCTTTTAAATTTGTGGTTCCTAA CTATGTGATATTCCAACAAATTAAATCTAGCGTAGCTGAGCCGGCTCAAAAGGTTTTAAAACTAGGTTATCCGTACGGAA CTGAGAATCGACTTGGAAACAGTAATGAAGAAAGTAAAATGTTTATTTACTGGCATATAGATGAATCAACTAATGATACG ACGTGCTCGCAGTTTGCGGAAAAGCTTATTGATTATTCCTTAGAACACGAAAATGTTGGTTTACAAGTAGCAGCGCTTAA TGATCGTCAAGCTAATCTCGTTTTTAATTATCTGTGCCAAGCTCTTAAAAATAAATATACCTTTTTAGATCTGGAGCAAG ACCAAGACTTAATTTGGAAGATTGTGTTTGGTAGAGAGGACACAGATGCAATTGGAAAGCTATTAATGCAGTTAAAATTT CGTTTAGGCATGAATTTGAAGCATGACCCGGAGACCAATCCGCAAAAATTAGCGGATTCCGCTCGATTTAAAAAGATTAA CTGGAAAAAGGTAATGGAAGACATTACTGAAACGATCATCCGCGTTAATTCACGAGACAATGAAATTTATCGCAATTTAG CTCGATCACGGGTGTTGGTCGATGTCGGTAGTCCATATAATACTAGAATGCAATTTAATGCGATTAGCGCCGGTATTCCA CAGATTGTTAACGTTGATAGTCCGTTCATTATTAATAGAAAGAATGGATGGATTATCAATGAAAAACAGAGTCTCAGCCA AGGGTTAGATTTTTATCTACAAGAGCTGGGTAATTGGAATAAATCCTTAGTTGCGACAACTAAGTATATGGAACAACTAA CACTTAAGCGCCAAGCCGACTGGTGGGAAAGAAGAACTAAGTATGAAAAATAA
Upstream 100 bases:
>100_bases ATTTTAATTACCATCATTGATACAACGATGGATCAATTTAAGACGATGTATCTAAGGATGCACTATGATCTTTTATAGAA AGCCACGGGGGAACTAACTA
Downstream 100 bases:
>100_bases ACTCATTCATTTAGGTTTGCCAATACCAGGGTTGTCTGAGCAACTGAAGGAGAATTTTGACTATATTGATATCCCATTTG AAAAACTTTGGGAACCCAAC
Product: hypothetical protein
Products: NA
Alternate protein names: Accessory Secretory ; Accessory Secretory Protein; Accessory Secretory
Number of amino acids: Translated: 550; Mature: 550
Protein sequence:
>550_residues MFYIMPAWENEVSELNRDLLKNLTNVFVGGKKSVKLAVLNFLPNLRYLLHVNGLTNYEYWNIWDAILGIERVDGMPLGPE ALDLPQGVRLINAMTSMDAYEGSKLYARIIRSSEGYLSEVQFMNPQNRHTDVYDDRGFKVCTNYYENEEVVRQEWFNECN QLIVRYEPKAKVAVQILGNYSNFEKRQYKTLNELLMEFVNSFFEEHFDPTQDRLIASTNLKIRPLMVEIQNRLPVTYLLD HLGPMDTTTVETLQPQIQGAFKFVVPNYVIFQQIKSSVAEPAQKVLKLGYPYGTENRLGNSNEESKMFIYWHIDESTNDT TCSQFAEKLIDYSLEHENVGLQVAALNDRQANLVFNYLCQALKNKYTFLDLEQDQDLIWKIVFGREDTDAIGKLLMQLKF RLGMNLKHDPETNPQKLADSARFKKINWKKVMEDITETIIRVNSRDNEIYRNLARSRVLVDVGSPYNTRMQFNAISAGIP QIVNVDSPFIINRKNGWIINEKQSLSQGLDFYLQELGNWNKSLVATTKYMEQLTLKRQADWWERRTKYEK
Sequences:
>Translated_550_residues MFYIMPAWENEVSELNRDLLKNLTNVFVGGKKSVKLAVLNFLPNLRYLLHVNGLTNYEYWNIWDAILGIERVDGMPLGPE ALDLPQGVRLINAMTSMDAYEGSKLYARIIRSSEGYLSEVQFMNPQNRHTDVYDDRGFKVCTNYYENEEVVRQEWFNECN QLIVRYEPKAKVAVQILGNYSNFEKRQYKTLNELLMEFVNSFFEEHFDPTQDRLIASTNLKIRPLMVEIQNRLPVTYLLD HLGPMDTTTVETLQPQIQGAFKFVVPNYVIFQQIKSSVAEPAQKVLKLGYPYGTENRLGNSNEESKMFIYWHIDESTNDT TCSQFAEKLIDYSLEHENVGLQVAALNDRQANLVFNYLCQALKNKYTFLDLEQDQDLIWKIVFGREDTDAIGKLLMQLKF RLGMNLKHDPETNPQKLADSARFKKINWKKVMEDITETIIRVNSRDNEIYRNLARSRVLVDVGSPYNTRMQFNAISAGIP QIVNVDSPFIINRKNGWIINEKQSLSQGLDFYLQELGNWNKSLVATTKYMEQLTLKRQADWWERRTKYEK >Mature_550_residues MFYIMPAWENEVSELNRDLLKNLTNVFVGGKKSVKLAVLNFLPNLRYLLHVNGLTNYEYWNIWDAILGIERVDGMPLGPE ALDLPQGVRLINAMTSMDAYEGSKLYARIIRSSEGYLSEVQFMNPQNRHTDVYDDRGFKVCTNYYENEEVVRQEWFNECN QLIVRYEPKAKVAVQILGNYSNFEKRQYKTLNELLMEFVNSFFEEHFDPTQDRLIASTNLKIRPLMVEIQNRLPVTYLLD HLGPMDTTTVETLQPQIQGAFKFVVPNYVIFQQIKSSVAEPAQKVLKLGYPYGTENRLGNSNEESKMFIYWHIDESTNDT TCSQFAEKLIDYSLEHENVGLQVAALNDRQANLVFNYLCQALKNKYTFLDLEQDQDLIWKIVFGREDTDAIGKLLMQLKF RLGMNLKHDPETNPQKLADSARFKKINWKKVMEDITETIIRVNSRDNEIYRNLARSRVLVDVGSPYNTRMQFNAISAGIP QIVNVDSPFIINRKNGWIINEKQSLSQGLDFYLQELGNWNKSLVATTKYMEQLTLKRQADWWERRTKYEK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64211; Mature: 64211
Theoretical pI: Translated: 6.01; Mature: 6.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFYIMPAWENEVSELNRDLLKNLTNVFVGGKKSVKLAVLNFLPNLRYLLHVNGLTNYEYW CEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHH NIWDAILGIERVDGMPLGPEALDLPQGVRLINAMTSMDAYEGSKLYARIIRSSEGYLSEV HHHHHHHHHHHCCCCCCCCHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHH QFMNPQNRHTDVYDDRGFKVCTNYYENEEVVRQEWFNECNQLIVRYEPKAKVAVQILGNY HHCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHEEEEECCCCEEEEEEECCC SNFEKRQYKTLNELLMEFVNSFFEEHFDPTQDRLIASTNLKIRPLMVEIQNRLPVTYLLD CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCEEEECCCEEEEHHEEHHHCCCHHHHHH HLGPMDTTTVETLQPQIQGAFKFVVPNYVIFQQIKSSVAEPAQKVLKLGYPYGTENRLGN CCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC SNEESKMFIYWHIDESTNDTTCSQFAEKLIDYSLEHENVGLQVAALNDRQANLVFNYLCQ CCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHH ALKNKYTFLDLEQDQDLIWKIVFGREDTDAIGKLLMQLKFRLGMNLKHDPETNPQKLADS HHCCCCEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH ARFKKINWKKVMEDITETIIRVNSRDNEIYRNLARSRVLVDVGSPYNTRMQFNAISAGIP HHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCEEEEECCCCCCCEEEEEEHHCCCC QIVNVDSPFIINRKNGWIINEKQSLSQGLDFYLQELGNWNKSLVATTKYMEQLTLKRQAD CEEECCCCEEEECCCCEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH WWERRTKYEK HHHHHHCCCC >Mature Secondary Structure MFYIMPAWENEVSELNRDLLKNLTNVFVGGKKSVKLAVLNFLPNLRYLLHVNGLTNYEYW CEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHH NIWDAILGIERVDGMPLGPEALDLPQGVRLINAMTSMDAYEGSKLYARIIRSSEGYLSEV HHHHHHHHHHHCCCCCCCCHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHH QFMNPQNRHTDVYDDRGFKVCTNYYENEEVVRQEWFNECNQLIVRYEPKAKVAVQILGNY HHCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHEEEEECCCCEEEEEEECCC SNFEKRQYKTLNELLMEFVNSFFEEHFDPTQDRLIASTNLKIRPLMVEIQNRLPVTYLLD CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCEEEECCCEEEEHHEEHHHCCCHHHHHH HLGPMDTTTVETLQPQIQGAFKFVVPNYVIFQQIKSSVAEPAQKVLKLGYPYGTENRLGN CCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC SNEESKMFIYWHIDESTNDTTCSQFAEKLIDYSLEHENVGLQVAALNDRQANLVFNYLCQ CCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHH ALKNKYTFLDLEQDQDLIWKIVFGREDTDAIGKLLMQLKFRLGMNLKHDPETNPQKLADS HHCCCCEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH ARFKKINWKKVMEDITETIIRVNSRDNEIYRNLARSRVLVDVGSPYNTRMQFNAISAGIP HHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCEEEEECCCCCCCEEEEEEHHCCCC QIVNVDSPFIINRKNGWIINEKQSLSQGLDFYLQELGNWNKSLVATTKYMEQLTLKRQAD CEEECCCCEEEECCCCEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH WWERRTKYEK HHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA