| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
Click here to switch to the map view.
The map label for this gene is 116491883
Identifier: 116491883
GI number: 116491883
Start: 69239
End: 70822
Strand: Direct
Name: 116491883
Synonym: PEPE_0065
Alternate gene names: NA
Gene position: 69239-70822 (Clockwise)
Preceding gene: 116491882
Following gene: 116491884
Centisome position: 3.78
GC content: 36.43
Gene sequence:
>1584_bases ATGAAAAATAAACTCATTCATTTAGGTTTGCCAATACCAGGGTTGTCTGAGCAACTGAAGGAGAATTTTGACTATATTGA TATCCCATTTGAAAAACTTTGGGAACCCAACGCAAAAAAAGGACTTCTTTTTATAAAAGGAAAATTAAATCCCTTATATT TGAATGCTTTATTTTTAATCACCCAGGATGCTTATTTAAAGGAAACCGAGTTATTAAAAAAGTTGCCTGGAAATAAAACA TTAATTGATAACACATTAACACTTCCCTTAGCCAGTCAAAATATATTGGAATTAAAAAATGCACAATTTATTGAAGTTGG TGATATAAAAGCCCTGGTTAAGGACCTTAACCAAACTTTCTATAGTGGTCAGTGGGGATTCAAGTTTACATTCGATAACA TTCAATTTGAGCCTTATTTTAAGGGTAGAATTGAACAGCTTGGTCATAATTATATTAGATTTATCGATCAAAATATCCAA GCATATCAAAAAGTTGCTAATTGGGGTGGACCGTTGGGAGTGGCGGGAAACACGCTTTGGGAAATTCGAATAGAATTTAA ACGCCAAAACCCAACTACTGATGTGCGCCTAGATGTGTCGATGATTAACCCTTATACCAATGAAATATATTATTCACAAA GTTTTGAAAATGACCAGCTAAATGAAGTGTTGCCACTTAAGGTTAGCGAACAAGGGGCATATATTTTAGTGGAACTATTT ATTAAAGGTAACAAGGTTGAATTAGATGTCGGACAGATTTCATTAAGAAAAGCCCGTGATGGACGGGGAACACTATTAGT CGGCGAAAAAGAAATGGTCGATGACCAAGCAATGAATGAGCAATTATATTATTACTTTGATCCAGGAGATTTTAAGCCTC CCTTGGTTGTTTATTTCAGTGGATTTCGTTTAGCTCTAGGAGTAGAGGGAGCTAACATGATGAGAGCGCTTGAAGCACCA GCATTGATCTTTGGGGAGCAACGGATCTTAGGGGGATCTTTTTACGTTGGCAGTAAAAAGTTTGAACAGGAAATTGTACG GATTATTCAAACCACTTTAAAAAAGCTCGGGTTCACTGCTAATCAATTAGTTTTATCCGGATTATCAATGGGAACGTACG CTAGTTTATATTATTCGTCGTACCTTAATCCGGAGTGGGTAGTCGTGGGTAAACCGTTGACTAAGTTAGGCGATATAGCA GCAAATGAACGAATTAATCGTCCCGATGCTTTTCCAACGTCTTTAGATGTTTTATTGAAACTTACCGGGGGGATTAGTAA TGAAAATATTGAACAAGCCAATAATATTTTCTGGGATTCATTTAGAAGCCATGACCACTCCAAAACTAACTTTGTAATCA CGTATATGAAAGAAGACGATTACGATAGAAATGCGTTCGATGATCTATACCGATACCTGCACCAAAATTCACCTAAGTCG CGGATAATTCATAAGGGATTAACTGGACGACATAATGATGATACTAACGGGATTGTTGAGTGGTTCTTAATGCAGATTCG AAATATTTTAACATCCAAGTATGGACGGAATTTTAAACTAGGAGAGACTACGGACGATGAATAG
Upstream 100 bases:
>100_bases GAGCTGGGTAATTGGAATAAATCCTTAGTTGCGACAACTAAGTATATGGAACAACTAACACTTAAGCGCCAAGCCGACTG GTGGGAAAGAAGAACTAAGT
Downstream 100 bases:
>100_bases TTCTTATGTTGTAATGTGGCCCATGGCGACCAATGGAACCTACAATTACGGTTCTACAATTAGTTATGAAAAAGGTTTAG TTAATTTTAGTAATAGTCAA
Product: hypothetical protein
Products: NA
Alternate protein names: Accessory Sec System; Accessory Secretory ; LOW QUALITY PROTEIN Accessory Sec System; Accessory Sescretory Protein
Number of amino acids: Translated: 527; Mature: 527
Protein sequence:
>527_residues MKNKLIHLGLPIPGLSEQLKENFDYIDIPFEKLWEPNAKKGLLFIKGKLNPLYLNALFLITQDAYLKETELLKKLPGNKT LIDNTLTLPLASQNILELKNAQFIEVGDIKALVKDLNQTFYSGQWGFKFTFDNIQFEPYFKGRIEQLGHNYIRFIDQNIQ AYQKVANWGGPLGVAGNTLWEIRIEFKRQNPTTDVRLDVSMINPYTNEIYYSQSFENDQLNEVLPLKVSEQGAYILVELF IKGNKVELDVGQISLRKARDGRGTLLVGEKEMVDDQAMNEQLYYYFDPGDFKPPLVVYFSGFRLALGVEGANMMRALEAP ALIFGEQRILGGSFYVGSKKFEQEIVRIIQTTLKKLGFTANQLVLSGLSMGTYASLYYSSYLNPEWVVVGKPLTKLGDIA ANERINRPDAFPTSLDVLLKLTGGISNENIEQANNIFWDSFRSHDHSKTNFVITYMKEDDYDRNAFDDLYRYLHQNSPKS RIIHKGLTGRHNDDTNGIVEWFLMQIRNILTSKYGRNFKLGETTDDE
Sequences:
>Translated_527_residues MKNKLIHLGLPIPGLSEQLKENFDYIDIPFEKLWEPNAKKGLLFIKGKLNPLYLNALFLITQDAYLKETELLKKLPGNKT LIDNTLTLPLASQNILELKNAQFIEVGDIKALVKDLNQTFYSGQWGFKFTFDNIQFEPYFKGRIEQLGHNYIRFIDQNIQ AYQKVANWGGPLGVAGNTLWEIRIEFKRQNPTTDVRLDVSMINPYTNEIYYSQSFENDQLNEVLPLKVSEQGAYILVELF IKGNKVELDVGQISLRKARDGRGTLLVGEKEMVDDQAMNEQLYYYFDPGDFKPPLVVYFSGFRLALGVEGANMMRALEAP ALIFGEQRILGGSFYVGSKKFEQEIVRIIQTTLKKLGFTANQLVLSGLSMGTYASLYYSSYLNPEWVVVGKPLTKLGDIA ANERINRPDAFPTSLDVLLKLTGGISNENIEQANNIFWDSFRSHDHSKTNFVITYMKEDDYDRNAFDDLYRYLHQNSPKS RIIHKGLTGRHNDDTNGIVEWFLMQIRNILTSKYGRNFKLGETTDDE >Mature_527_residues MKNKLIHLGLPIPGLSEQLKENFDYIDIPFEKLWEPNAKKGLLFIKGKLNPLYLNALFLITQDAYLKETELLKKLPGNKT LIDNTLTLPLASQNILELKNAQFIEVGDIKALVKDLNQTFYSGQWGFKFTFDNIQFEPYFKGRIEQLGHNYIRFIDQNIQ AYQKVANWGGPLGVAGNTLWEIRIEFKRQNPTTDVRLDVSMINPYTNEIYYSQSFENDQLNEVLPLKVSEQGAYILVELF IKGNKVELDVGQISLRKARDGRGTLLVGEKEMVDDQAMNEQLYYYFDPGDFKPPLVVYFSGFRLALGVEGANMMRALEAP ALIFGEQRILGGSFYVGSKKFEQEIVRIIQTTLKKLGFTANQLVLSGLSMGTYASLYYSSYLNPEWVVVGKPLTKLGDIA ANERINRPDAFPTSLDVLLKLTGGISNENIEQANNIFWDSFRSHDHSKTNFVITYMKEDDYDRNAFDDLYRYLHQNSPKS RIIHKGLTGRHNDDTNGIVEWFLMQIRNILTSKYGRNFKLGETTDDE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60372; Mature: 60372
Theoretical pI: Translated: 6.00; Mature: 6.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNKLIHLGLPIPGLSEQLKENFDYIDIPFEKLWEPNAKKGLLFIKGKLNPLYLNALFLI CCCCEEEECCCCCCHHHHHHCCCCEEECCHHHHCCCCCCCCEEEEEECCCEEEEEEEEEE TQDAYLKETELLKKLPGNKTLIDNTLTLPLASQNILELKNAQFIEVGDIKALVKDLNQTF ECCCHHHHHHHHHHCCCCCEEECCEEEEEECCCCHHHHCCCCEEEEHHHHHHHHHHHHHH YSGQWGFKFTFDNIQFEPYFKGRIEQLGHNYIRFIDQNIQAYQKVANWGGPLGVAGNTLW CCCCCCEEEEECCEEECCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE EIRIEFKRQNPTTDVRLDVSMINPYTNEIYYSQSFENDQLNEVLPLKVSEQGAYILVELF EEEEEEECCCCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCEECEEECCCCCEEEEEEE IKGNKVELDVGQISLRKARDGRGTLLVGEKEMVDDQAMNEQLYYYFDPGDFKPPLVVYFS ECCCEEEEEECCEEEEECCCCCCEEEECCHHHHCHHHCCCCEEEEECCCCCCCCEEEEEE GFRLALGVEGANMMRALEAPALIFGEQRILGGSFYVGSKKFEQEIVRIIQTTLKKLGFTA CEEEEEECCCHHHHHHHCCCEEEECCCEEECCEEEECCHHHHHHHHHHHHHHHHHHCCCH NQLVLSGLSMGTYASLYYSSYLNPEWVVVGKPLTKLGDIAANERINRPDAFPTSLDVLLK HHHHHHCCCCCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCCCHHHHHHH LTGGISNENIEQANNIFWDSFRSHDHSKTNFVITYMKEDDYDRNAFDDLYRYLHQNSPKS HCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCHH RIIHKGLTGRHNDDTNGIVEWFLMQIRNILTSKYGRNFKLGETTDDE HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCC >Mature Secondary Structure MKNKLIHLGLPIPGLSEQLKENFDYIDIPFEKLWEPNAKKGLLFIKGKLNPLYLNALFLI CCCCEEEECCCCCCHHHHHHCCCCEEECCHHHHCCCCCCCCEEEEEECCCEEEEEEEEEE TQDAYLKETELLKKLPGNKTLIDNTLTLPLASQNILELKNAQFIEVGDIKALVKDLNQTF ECCCHHHHHHHHHHCCCCCEEECCEEEEEECCCCHHHHCCCCEEEEHHHHHHHHHHHHHH YSGQWGFKFTFDNIQFEPYFKGRIEQLGHNYIRFIDQNIQAYQKVANWGGPLGVAGNTLW CCCCCCEEEEECCEEECCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE EIRIEFKRQNPTTDVRLDVSMINPYTNEIYYSQSFENDQLNEVLPLKVSEQGAYILVELF EEEEEEECCCCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCEECEEECCCCCEEEEEEE IKGNKVELDVGQISLRKARDGRGTLLVGEKEMVDDQAMNEQLYYYFDPGDFKPPLVVYFS ECCCEEEEEECCEEEEECCCCCCEEEECCHHHHCHHHCCCCEEEEECCCCCCCCEEEEEE GFRLALGVEGANMMRALEAPALIFGEQRILGGSFYVGSKKFEQEIVRIIQTTLKKLGFTA CEEEEEECCCHHHHHHHCCCEEEECCCEEECCEEEECCHHHHHHHHHHHHHHHHHHCCCH NQLVLSGLSMGTYASLYYSSYLNPEWVVVGKPLTKLGDIAANERINRPDAFPTSLDVLLK HHHHHHCCCCCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCCCHHHHHHH LTGGISNENIEQANNIFWDSFRSHDHSKTNFVITYMKEDDYDRNAFDDLYRYLHQNSPKS HCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCHH RIIHKGLTGRHNDDTNGIVEWFLMQIRNILTSKYGRNFKLGETTDDE HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA