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The map label for this gene is secY [H]

Identifier: 116491881

GI number: 116491881

Start: 66342

End: 67574

Strand: Direct

Name: secY [H]

Synonym: PEPE_0063

Alternate gene names: 116491881

Gene position: 66342-67574 (Clockwise)

Preceding gene: 116491880

Following gene: 116491882

Centisome position: 3.62

GC content: 34.87

Gene sequence:

>1233_bases
ATGAAGAATAAATTTATCCATAGTGAATTGTTTTCGAAGGTTTTATTTACTTTGATGATGGTAGTTTTAATGGAATTAGG
TCGTCAAATTGTAATTCCATCTTTAGATTCATCCATGAGTCGTCAAGTACTAGAGGCTTCACCACTTTTAAGGAATTTAT
CAGCCTTAACTGGGGGGCAGGCGAATTACCCTTCCTTATTTTCAGTTGGATTAGGCCCATACATGACAGGGATGATATTA
TTCCAAGCTATTCAGCTCTTAGATATTGATGAGCTAAATAAGATTAACGATTATAAACGAGGAATGATTCAACGTTGGAT
TTCATTTGTCATTGCCCTGCTCCAAACTCTGCAGTTTATCTATACGATTCGTGAACATATTAATTTTTCAGGAATTAAAG
TGTGGGGAATTGATTACAACTTAATTGTGGCATTTTTTGTTTTAGTTGCAGGAGCAATGATTGTAGCTTGGATGTCAGAT
ATGATCACTAAATATGGAATCGGTGGATCAGGAGTTTTAATTTTGCCAGGAATGATTGATAGTATTCCGCGAGTGCTACT
TTATGGACAAGGTTTAGGCTCAGGAGCAGTATTTTTCACACCTAAATTATGGCTGGTCCTAATAATTTCAGTAGCAGTAG
TAGTAATTTTTACGATATTTATCAATAAAGCTGAATTACGAATTCCGCTTCAGCGACCTTTTGTTCAAAATGATTTTTCT
GAATCGTATTTACCAATTCGAGTACTAGCGGCAGGTAGCATGCCCTTCATGTTTACTACCACGGTATTTATGATTCCAAG
CTATATTGGTTCTTTTGTTCCAGAAGGCGAATTTAATCGATTTGTTCAAAATTATGTGGCATTTGATAATCCCGTTGGAA
TCTTGATTTACTGTAGCATTATTGTCTTTTTAGGCTACGTGTTTAGTTTTATGAACTTTCAAACAGAAAGATTAACTAAG
AATTTAAAGAAATCTGGTGACTACATATTTAATGTCGTTCCGGGAACTGCAACCAGACATTATCTAAACCAAAGATTGTT
TCATTTGAGTACGGTTGCTAACATCTTCTTTTTAATTATCGTCGGAACACCACTAATAGTAGGGCTTTACCTACCAGAAA
TTACTAACTTTGCTTTCGTCTTTGCTAACATCCTCATTTTAATTACCATCATTGATACAACGATGGATCAATTTAAGACG
ATGTATCTAAGGATGCACTATGATCTTTTATAG

Upstream 100 bases:

>100_bases
TTGAACAAATGAAGAAGTTATTCTGGAAAAATACAGTTAAATATATGCTGTTGTCAGAATTAATACCTGGTAAAAATGGA
TCAGTTAGGGTGGAATTTCC

Downstream 100 bases:

>100_bases
AAAGCCACGGGGGAACTAACTAATGTTTTATATTATGCCGGCCTGGGAGAATGAAGTCAGCGAATTAAATCGGGATTTAC
TAAAAAATCTGACTAATGTA

Product: protein translocase subunit secY/sec61 alpha

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 410

Protein sequence:

>410_residues
MKNKFIHSELFSKVLFTLMMVVLMELGRQIVIPSLDSSMSRQVLEASPLLRNLSALTGGQANYPSLFSVGLGPYMTGMIL
FQAIQLLDIDELNKINDYKRGMIQRWISFVIALLQTLQFIYTIREHINFSGIKVWGIDYNLIVAFFVLVAGAMIVAWMSD
MITKYGIGGSGVLILPGMIDSIPRVLLYGQGLGSGAVFFTPKLWLVLIISVAVVVIFTIFINKAELRIPLQRPFVQNDFS
ESYLPIRVLAAGSMPFMFTTTVFMIPSYIGSFVPEGEFNRFVQNYVAFDNPVGILIYCSIIVFLGYVFSFMNFQTERLTK
NLKKSGDYIFNVVPGTATRHYLNQRLFHLSTVANIFFLIIVGTPLIVGLYLPEITNFAFVFANILILITIIDTTMDQFKT
MYLRMHYDLL

Sequences:

>Translated_410_residues
MKNKFIHSELFSKVLFTLMMVVLMELGRQIVIPSLDSSMSRQVLEASPLLRNLSALTGGQANYPSLFSVGLGPYMTGMIL
FQAIQLLDIDELNKINDYKRGMIQRWISFVIALLQTLQFIYTIREHINFSGIKVWGIDYNLIVAFFVLVAGAMIVAWMSD
MITKYGIGGSGVLILPGMIDSIPRVLLYGQGLGSGAVFFTPKLWLVLIISVAVVVIFTIFINKAELRIPLQRPFVQNDFS
ESYLPIRVLAAGSMPFMFTTTVFMIPSYIGSFVPEGEFNRFVQNYVAFDNPVGILIYCSIIVFLGYVFSFMNFQTERLTK
NLKKSGDYIFNVVPGTATRHYLNQRLFHLSTVANIFFLIIVGTPLIVGLYLPEITNFAFVFANILILITIIDTTMDQFKT
MYLRMHYDLL
>Mature_410_residues
MKNKFIHSELFSKVLFTLMMVVLMELGRQIVIPSLDSSMSRQVLEASPLLRNLSALTGGQANYPSLFSVGLGPYMTGMIL
FQAIQLLDIDELNKINDYKRGMIQRWISFVIALLQTLQFIYTIREHINFSGIKVWGIDYNLIVAFFVLVAGAMIVAWMSD
MITKYGIGGSGVLILPGMIDSIPRVLLYGQGLGSGAVFFTPKLWLVLIISVAVVVIFTIFINKAELRIPLQRPFVQNDFS
ESYLPIRVLAAGSMPFMFTTTVFMIPSYIGSFVPEGEFNRFVQNYVAFDNPVGILIYCSIIVFLGYVFSFMNFQTERLTK
NLKKSGDYIFNVVPGTATRHYLNQRLFHLSTVANIFFLIIVGTPLIVGLYLPEITNFAFVFANILILITIIDTTMDQFKT
MYLRMHYDLL

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=422, Percent_Identity=22.7488151658768, Blast_Score=90, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 46406; Mature: 46406

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKFIHSELFSKVLFTLMMVVLMELGRQIVIPSLDSSMSRQVLEASPLLRNLSALTGGQ
CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCC
ANYPSLFSVGLGPYMTGMILFQAIQLLDIDELNKINDYKRGMIQRWISFVIALLQTLQFI
CCCCCHHHHCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YTIREHINFSGIKVWGIDYNLIVAFFVLVAGAMIVAWMSDMITKYGIGGSGVLILPGMID
HHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHH
SIPRVLLYGQGLGSGAVFFTPKLWLVLIISVAVVVIFTIFINKAELRIPLQRPFVQNDFS
HHHHHHEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCHHCCCC
ESYLPIRVLAAGSMPFMFTTTVFMIPSYIGSFVPEGEFNRFVQNYVAFDNPVGILIYCSI
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHH
IVFLGYVFSFMNFQTERLTKNLKKSGDYIFNVVPGTATRHYLNQRLFHLSTVANIFFLII
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
VGTPLIVGLYLPEITNFAFVFANILILITIIDTTMDQFKTMYLRMHYDLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKNKFIHSELFSKVLFTLMMVVLMELGRQIVIPSLDSSMSRQVLEASPLLRNLSALTGGQ
CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCC
ANYPSLFSVGLGPYMTGMILFQAIQLLDIDELNKINDYKRGMIQRWISFVIALLQTLQFI
CCCCCHHHHCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YTIREHINFSGIKVWGIDYNLIVAFFVLVAGAMIVAWMSDMITKYGIGGSGVLILPGMID
HHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHH
SIPRVLLYGQGLGSGAVFFTPKLWLVLIISVAVVVIFTIFINKAELRIPLQRPFVQNDFS
HHHHHHEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCHHCCCC
ESYLPIRVLAAGSMPFMFTTTVFMIPSYIGSFVPEGEFNRFVQNYVAFDNPVGILIYCSI
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHH
IVFLGYVFSFMNFQTERLTKNLKKSGDYIFNVVPGTATRHYLNQRLFHLSTVANIFFLII
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
VGTPLIVGLYLPEITNFAFVFANILILITIIDTTMDQFKTMYLRMHYDLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]