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The map label for this gene is yhdW [H]

Identifier: 116491858

GI number: 116491858

Start: 37405

End: 39198

Strand: Reverse

Name: yhdW [H]

Synonym: PEPE_0040

Alternate gene names: 116491858

Gene position: 39198-37405 (Counterclockwise)

Preceding gene: 116491859

Following gene: 116491856

Centisome position: 2.14

GC content: 36.34

Gene sequence:

>1794_bases
ATGTCGAGCACTCTGAAAACTTATCGTTATATTTTTAAACACATTTTTAGCTATATTTGGCTTTTTATTGCTTCTACAGT
TGCTGTATACGGAATTTTAATCCCAATTTTTACACTAATTGGAAGCGTAATGCTACGTTTGGCAAGAGTTCGTTACATCT
CTAATACCAATTTAATTGAAATTATTAGCCAGCATCCTGTTTTAGATTTAGGTTTAATTCTTTTAATTCTAGCAGTAATT
GTGGCCATCTATTGGCAAGTCACATTTCTATTTTTAGGAACCATGCAAATTAATTATGGAAAGAAGTTAACGATTGATTC
ACTCTTACGGCTTTCCATTCAACGTGTCCGTAAGACCTTTTTTCGTTCCGTTTGGTTCTTACTAATCTACTGCATTTTAA
TCTTACCTTTTGGTGGATTAGGTTTTTCGACACCTTTATTAAATAAAATTAGGATTCCTAGTTTCCTAGTTGATTATTTT
TTAACTGAAAATCGTCCACTTTTGTTAGTGATGATTTTGCTATACGTGGTTACTTTTTATCTCGGAATTCGCTTATTCCT
AGTTCTACCATTAATCATTTTGGGTAAACGGAACGCCCATACTGCGGTAAAACAGAGTTGGCAAATAACTAAGATTAACT
TTAAGCCAATTGTTTTACGACTTGTATTACTCTTTGCCACCACCATTGTTGTAATAATTGCTGGGCAGCTTTTAGTACTA
GGGGAACAAACCCTTTTCGACCGTATGACACCAACCGGAGTGGCCTTTCTCGCCGCTTCCGTAAACTTAATTTTGATTGA
ATTTTTTATGTTTCTTTCGAGCATTGCCGCGGGTGCTGGTTCTTTGATGATCATGACTGAATACCTGGCTGGAGATCAGC
GCTTTACTGCCCATACTCATCGATTAAGCGACCAGCTTCAAGAACTTAGCTACAACGTCGGAAACCAACGTTGGATTCGA
ATTATTGCTGGTTTACTTGTTATCGGGGGCATTGGATTTAATTCGTTGTATCTAACTGGATTTTTTAGTGACACTCCCAT
TACCATTTCTCATCGCGGGGTTAACGCTAAAAATGGAGTGCAAAATACCATTGAATCCCTTAAGAATACTAGTCGATTAC
ATCCTGATTTCATCGAAATCGATATCCATGAAACTAAGGACCATCAATTTGTATTAATGCATGATGAAAATCTTAAAAAT
TTAACCGGGGTTGATAAAGCGCCGCATCAACTGACTTTAAAGCAACTCACCAAATTAACTGCGCATGAAAATGGAAGTTC
AGCTAAGATAGCTAGCTTAGATGATTACATGGACGCTGCTGAAAAGCTTAAACAACCCCTACTAATTGAATTTAAAACTA
CTAAATACGATGATCCAAAAGTGGTTGAGCGTTTTAATGCTAAATACGGACAAAGAATTCTAAAAAATCATGATCAAGTC
CATAGCCTAGATTATGATGCCGTTGAAAAACTTAAAGAACTTAATCCAAAATTAACCGTGGGCTATATTCTGCCTTTCAA
TTTTATTGGAGTTCCACAGTCTAGCGCCGATTTTTACACGATGGAATATTCAACTTTAAATAACTCATTTTTACTAACTG
CCGAACTAACTGGTCGAAAAGTTTATGCTTGGACCGTCAATAGTGACGATGCAATGGCCAGATTGAACTTTATGGGAGTC
GATGGCATTATCACCGATAAACTTGAACTTCTACAAAAAACGGTTAAACAACTTAACCACCATCCAAGTTATGGCAGTCG
ATTAATCAACTTTACTTATGAACTTGGCAGTTAA

Upstream 100 bases:

>100_bases
TTTAATCTAAGTTTTAACCTTGATCCGATTTAGATTAGACTTTGTTGTAGCTCCTTTTATTTTGGGCAAATTCACACAAA
AAATTACTTAGGGGAGAATC

Downstream 100 bases:

>100_bases
AATATTCAAAAAGGCGACCATGACATTAATGTCATGGTCGCCTTTTTTCGCTGTATTTTATTTCATACTCTAAATATTTT
TTACATATTCTGCATGCTTC

Product: glycerophosphoryl diester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 597; Mature: 596

Protein sequence:

>597_residues
MSSTLKTYRYIFKHIFSYIWLFIASTVAVYGILIPIFTLIGSVMLRLARVRYISNTNLIEIISQHPVLDLGLILLILAVI
VAIYWQVTFLFLGTMQINYGKKLTIDSLLRLSIQRVRKTFFRSVWFLLIYCILILPFGGLGFSTPLLNKIRIPSFLVDYF
LTENRPLLLVMILLYVVTFYLGIRLFLVLPLIILGKRNAHTAVKQSWQITKINFKPIVLRLVLLFATTIVVIIAGQLLVL
GEQTLFDRMTPTGVAFLAASVNLILIEFFMFLSSIAAGAGSLMIMTEYLAGDQRFTAHTHRLSDQLQELSYNVGNQRWIR
IIAGLLVIGGIGFNSLYLTGFFSDTPITISHRGVNAKNGVQNTIESLKNTSRLHPDFIEIDIHETKDHQFVLMHDENLKN
LTGVDKAPHQLTLKQLTKLTAHENGSSAKIASLDDYMDAAEKLKQPLLIEFKTTKYDDPKVVERFNAKYGQRILKNHDQV
HSLDYDAVEKLKELNPKLTVGYILPFNFIGVPQSSADFYTMEYSTLNNSFLLTAELTGRKVYAWTVNSDDAMARLNFMGV
DGIITDKLELLQKTVKQLNHHPSYGSRLINFTYELGS

Sequences:

>Translated_597_residues
MSSTLKTYRYIFKHIFSYIWLFIASTVAVYGILIPIFTLIGSVMLRLARVRYISNTNLIEIISQHPVLDLGLILLILAVI
VAIYWQVTFLFLGTMQINYGKKLTIDSLLRLSIQRVRKTFFRSVWFLLIYCILILPFGGLGFSTPLLNKIRIPSFLVDYF
LTENRPLLLVMILLYVVTFYLGIRLFLVLPLIILGKRNAHTAVKQSWQITKINFKPIVLRLVLLFATTIVVIIAGQLLVL
GEQTLFDRMTPTGVAFLAASVNLILIEFFMFLSSIAAGAGSLMIMTEYLAGDQRFTAHTHRLSDQLQELSYNVGNQRWIR
IIAGLLVIGGIGFNSLYLTGFFSDTPITISHRGVNAKNGVQNTIESLKNTSRLHPDFIEIDIHETKDHQFVLMHDENLKN
LTGVDKAPHQLTLKQLTKLTAHENGSSAKIASLDDYMDAAEKLKQPLLIEFKTTKYDDPKVVERFNAKYGQRILKNHDQV
HSLDYDAVEKLKELNPKLTVGYILPFNFIGVPQSSADFYTMEYSTLNNSFLLTAELTGRKVYAWTVNSDDAMARLNFMGV
DGIITDKLELLQKTVKQLNHHPSYGSRLINFTYELGS
>Mature_596_residues
SSTLKTYRYIFKHIFSYIWLFIASTVAVYGILIPIFTLIGSVMLRLARVRYISNTNLIEIISQHPVLDLGLILLILAVIV
AIYWQVTFLFLGTMQINYGKKLTIDSLLRLSIQRVRKTFFRSVWFLLIYCILILPFGGLGFSTPLLNKIRIPSFLVDYFL
TENRPLLLVMILLYVVTFYLGIRLFLVLPLIILGKRNAHTAVKQSWQITKINFKPIVLRLVLLFATTIVVIIAGQLLVLG
EQTLFDRMTPTGVAFLAASVNLILIEFFMFLSSIAAGAGSLMIMTEYLAGDQRFTAHTHRLSDQLQELSYNVGNQRWIRI
IAGLLVIGGIGFNSLYLTGFFSDTPITISHRGVNAKNGVQNTIESLKNTSRLHPDFIEIDIHETKDHQFVLMHDENLKNL
TGVDKAPHQLTLKQLTKLTAHENGSSAKIASLDDYMDAAEKLKQPLLIEFKTTKYDDPKVVERFNAKYGQRILKNHDQVH
SLDYDAVEKLKELNPKLTVGYILPFNFIGVPQSSADFYTMEYSTLNNSFLLTAELTGRKVYAWTVNSDDAMARLNFMGVD
GIITDKLELLQKTVKQLNHHPSYGSRLINFTYELGS

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 67779; Mature: 67648

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSTLKTYRYIFKHIFSYIWLFIASTVAVYGILIPIFTLIGSVMLRLARVRYISNTNLIE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
IISQHPVLDLGLILLILAVIVAIYWQVTFLFLGTMQINYGKKLTIDSLLRLSIQRVRKTF
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHH
FRSVWFLLIYCILILPFGGLGFSTPLLNKIRIPSFLVDYFLTENRPLLLVMILLYVVTFY
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LGIRLFLVLPLIILGKRNAHTAVKQSWQITKINFKPIVLRLVLLFATTIVVIIAGQLLVL
HHHHHHHHHHHHHHCCCCHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCHHEE
GEQTLFDRMTPTGVAFLAASVNLILIEFFMFLSSIAAGAGSLMIMTEYLAGDQRFTAHTH
CCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHH
RLSDQLQELSYNVGNQRWIRIIAGLLVIGGIGFNSLYLTGFFSDTPITISHRGVNAKNGV
HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEECCCCCCCHH
QNTIESLKNTSRLHPDFIEIDIHETKDHQFVLMHDENLKNLTGVDKAPHQLTLKQLTKLT
HHHHHHHHHCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
AHENGSSAKIASLDDYMDAAEKLKQPLLIEFKTTKYDDPKVVERFNAKYGQRILKNHDQV
HCCCCCCCEEEHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHH
HSLDYDAVEKLKELNPKLTVGYILPFNFIGVPQSSADFYTMEYSTLNNSFLLTAELTGRK
HCCCHHHHHHHHHCCCCEEEEEEECEEEECCCCCCCCEEEEEEEECCCCEEEEEEECCCE
VYAWTVNSDDAMARLNFMGVDGIITDKLELLQKTVKQLNHHPSYGSRLINFTYELGS
EEEEEECCCCHHHEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCC
>Mature Secondary Structure 
SSTLKTYRYIFKHIFSYIWLFIASTVAVYGILIPIFTLIGSVMLRLARVRYISNTNLIE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
IISQHPVLDLGLILLILAVIVAIYWQVTFLFLGTMQINYGKKLTIDSLLRLSIQRVRKTF
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHH
FRSVWFLLIYCILILPFGGLGFSTPLLNKIRIPSFLVDYFLTENRPLLLVMILLYVVTFY
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LGIRLFLVLPLIILGKRNAHTAVKQSWQITKINFKPIVLRLVLLFATTIVVIIAGQLLVL
HHHHHHHHHHHHHHCCCCHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCHHEE
GEQTLFDRMTPTGVAFLAASVNLILIEFFMFLSSIAAGAGSLMIMTEYLAGDQRFTAHTH
CCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHH
RLSDQLQELSYNVGNQRWIRIIAGLLVIGGIGFNSLYLTGFFSDTPITISHRGVNAKNGV
HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEECCCCCCCHH
QNTIESLKNTSRLHPDFIEIDIHETKDHQFVLMHDENLKNLTGVDKAPHQLTLKQLTKLT
HHHHHHHHHCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
AHENGSSAKIASLDDYMDAAEKLKQPLLIEFKTTKYDDPKVVERFNAKYGQRILKNHDQV
HCCCCCCCEEEHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHH
HSLDYDAVEKLKELNPKLTVGYILPFNFIGVPQSSADFYTMEYSTLNNSFLLTAELTGRK
HCCCHHHHHHHHHCCCCEEEEEEECEEEECCCCCCCCEEEEEEEECCCCEEEEEEECCCE
VYAWTVNSDDAMARLNFMGVDGIITDKLELLQKTVKQLNHHPSYGSRLINFTYELGS
EEEEEECCCCHHHEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]