Click here to switch to the map view.

The map label for this gene is yqfA [C]

Identifier: 116491855

GI number: 116491855

Start: 34634

End: 35272

Strand: Direct

Name: yqfA [C]

Synonym: PEPE_0037

Alternate gene names: 116491855

Gene position: 34634-35272 (Clockwise)

Preceding gene: 116491853

Following gene: 116491857

Centisome position: 1.89

GC content: 40.22

Gene sequence:

>639_bases
ATGGTGCAAACACGAAGAAATCAGATTATATACGAAGTTTGGAATGCTGTGACCCATGGTGTGGCCTTTTTTGGTAGCTT
AGGCTTAGTTATTTTATTGATTGTTAAAGCCGTCACGCAAAATTTATCATCCACCGCTATTACCAGCTTGGTTATTTATG
GAGCAACCTTACTAATGTTATATTTGGCTTCAACGTTGTTTCACTGTTTAGCATTTACGAAAGCCAGACGAGTTTTTCAA
ATTTTCGACCATAGTAATATTTTTTTGCTAATCGCAGGGACTTACACGCCATATTGTATTATTTTTGTCGGCGGAACTAG
TGGGATATTGATGTTGAGTATGATTTGGGCAATGGCGTTGGCAGGAATCATCACTCATATTTGGAGCAAAGGTCGTTTTC
AAAAGGTGGAAACAACGATTTATGTGATTATGGGATGGATGTGTTTGTTAGCAGGAAAGGCGCTATATGCTAACTTATCA
CCAACTGGATTTTGGTTGCTAGTCGCAGGAGGCGTGGTATTCACCGTGGGAGCGGTGATTTATAGCTTTCCGCGCATCCC
GGGACTACATTTGATTTGGCACTTTTTCGTGATGGCGGGAACGATGCTCATGTTTGGATCAATTTATTTGAATATATAG

Upstream 100 bases:

>100_bases
CATAAATTTTATTCAAATTGATATGCATTTTGCTTTACGTAGAATACGATTCTATGTATAATGGCACCAACAACTACATA
ATACGAAATGAGGGATAAAA

Downstream 100 bases:

>100_bases
GAAGTAATCAGATCAAAACACAACAAAAAGAGATTTCAGTATCGACTGAAATCTCTTTTAAAATATACTAATTAATTTAG
ATATAATTGATAAGCAAAAC

Product: hemolysin III-like protein

Products: NA

Alternate protein names: Hemolysin III; Hly-III [H]

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MVQTRRNQIIYEVWNAVTHGVAFFGSLGLVILLIVKAVTQNLSSTAITSLVIYGATLLMLYLASTLFHCLAFTKARRVFQ
IFDHSNIFLLIAGTYTPYCIIFVGGTSGILMLSMIWAMALAGIITHIWSKGRFQKVETTIYVIMGWMCLLAGKALYANLS
PTGFWLLVAGGVVFTVGAVIYSFPRIPGLHLIWHFFVMAGTMLMFGSIYLNI

Sequences:

>Translated_212_residues
MVQTRRNQIIYEVWNAVTHGVAFFGSLGLVILLIVKAVTQNLSSTAITSLVIYGATLLMLYLASTLFHCLAFTKARRVFQ
IFDHSNIFLLIAGTYTPYCIIFVGGTSGILMLSMIWAMALAGIITHIWSKGRFQKVETTIYVIMGWMCLLAGKALYANLS
PTGFWLLVAGGVVFTVGAVIYSFPRIPGLHLIWHFFVMAGTMLMFGSIYLNI
>Mature_212_residues
MVQTRRNQIIYEVWNAVTHGVAFFGSLGLVILLIVKAVTQNLSSTAITSLVIYGATLLMLYLASTLFHCLAFTKARRVFQ
IFDHSNIFLLIAGTYTPYCIIFVGGTSGILMLSMIWAMALAGIITHIWSKGRFQKVETTIYVIMGWMCLLAGKALYANLS
PTGFWLLVAGGVVFTVGAVIYSFPRIPGLHLIWHFFVMAGTMLMFGSIYLNI

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Homo sapiens, GI154759275, Length=155, Percent_Identity=32.9032258064516, Blast_Score=72, Evalue=4e-13,
Organism=Escherichia coli, GI1789266, Length=202, Percent_Identity=40.5940594059406, Blast_Score=144, Evalue=6e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 23491; Mature: 23491

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQTRRNQIIYEVWNAVTHGVAFFGSLGLVILLIVKAVTQNLSSTAITSLVIYGATLLML
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
YLASTLFHCLAFTKARRVFQIFDHSNIFLLIAGTYTPYCIIFVGGTSGILMLSMIWAMAL
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHH
AGIITHIWSKGRFQKVETTIYVIMGWMCLLAGKALYANLSPTGFWLLVAGGVVFTVGAVI
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHEECCCCCHHHHHHHHHHHHHHHHHH
YSFPRIPGLHLIWHFFVMAGTMLMFGSIYLNI
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVQTRRNQIIYEVWNAVTHGVAFFGSLGLVILLIVKAVTQNLSSTAITSLVIYGATLLML
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
YLASTLFHCLAFTKARRVFQIFDHSNIFLLIAGTYTPYCIIFVGGTSGILMLSMIWAMAL
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHH
AGIITHIWSKGRFQKVETTIYVIMGWMCLLAGKALYANLSPTGFWLLVAGGVVFTVGAVI
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHEECCCCCHHHHHHHHHHHHHHHHHH
YSFPRIPGLHLIWHFFVMAGTMLMFGSIYLNI
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7495855 [H]