Click here to switch to the map view.

The map label for this gene is rlpA [H]

Identifier: 116329529

GI number: 116329529

Start: 3577489

End: 3578400

Strand: Direct

Name: rlpA [H]

Synonym: LBL_3006

Alternate gene names: 116329529

Gene position: 3577489-3578400 (Clockwise)

Preceding gene: 116329526

Following gene: 116329531

Centisome position: 98.98

GC content: 40.57

Gene sequence:

>912_bases
ATGAAACAAGTAGCAATTTTAACCACCTTGATCATTTTTACGTCTTGCGCTTCGGTTGAATCTAAACGAAATATCAGCGC
TTCCGGAGATCCGTCAGAGATATTTTTTGAAAAAGAAATTGCACCGATGGATAAAGCTGGTTCGAATTCCGTTTCTCAAA
AACCCGGACGTAGATCTTTTGAAGAGGAATTGAGGGTTGAAAAATACGCAAAAGCACAACCTCCCGAAAAAACGAATTCC
GGAGATTTTGACGAAATCGGAATGTCTTCTTGGTACGGAGCTAAATTTCACGGAAAACCGACTGCAAGTGGAGAGAAGTT
CGATAAAACAAAATTAACCGCAGCCCATCCTACTCTACCTTTAGGCTCCATCATCCGAGTTCAAAATCTTGAAAATCAAA
AAGAGGTTTTAGTCCGCGTTAATGATAGAGGGCCTTTCGTAAAAGATAGGATCATCGACCTTTCTGAAAAAGCAGCGGAT
ACTTTGGATTTTAAGGATATCGGCATTGCGAAAGTGGGTATCAAAGTGGTAAAACTCGGCGGAGCTGCCGGTGAAGAATC
GGAAGATCTCGAAAACGTCGATGATGAGGAAAACGCTCTTTTGGAAGACGAAAAGCCTGAAAAGTTAAATCCTCAAAAAT
CGGATTATCCAAACAAATCTCTCTCTGATGGAAAATATGTGAAAGGTTCTCCAAAGGGTTATACGGTTCAAGTAGGAGTA
TTCCGCGACCAAACCAAAGCGGAAGCTTATAAGTCCAACCTTGGACAAGAATACGGTGAAAAGACTTTTCTATTTGCTAG
AGATGGTTTGTTTGTGATTCAATTGGGCGATTTCGCAAGTAGAACCGATGCCGAATCGCTGAAGTCGAAATTAAAAACTG
ACGGAATCGATTGTTTTATTCCAAAAAAGTAA

Upstream 100 bases:

>100_bases
AACTATCGGAATTATTTTGAACTTGGACGACTTAAAAAGTTGTAATGGTTTTTTCCGATTCCACCGATTTAAAAAAGGAA
TTGTTAAAACCGAGGAAATC

Downstream 100 bases:

>100_bases
TCAATTCATTAAAAAATTTTTCTTCATTAAAGGACCTTCGTAGAATTACGGGGGTTTTATTTTTAAAGATACATTTTATT
AAAGTATTGATTTTTATTCC

Product: RlpA-like lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MKQVAILTTLIIFTSCASVESKRNISASGDPSEIFFEKEIAPMDKAGSNSVSQKPGRRSFEEELRVEKYAKAQPPEKTNS
GDFDEIGMSSWYGAKFHGKPTASGEKFDKTKLTAAHPTLPLGSIIRVQNLENQKEVLVRVNDRGPFVKDRIIDLSEKAAD
TLDFKDIGIAKVGIKVVKLGGAAGEESEDLENVDDEENALLEDEKPEKLNPQKSDYPNKSLSDGKYVKGSPKGYTVQVGV
FRDQTKAEAYKSNLGQEYGEKTFLFARDGLFVIQLGDFASRTDAESLKSKLKTDGIDCFIPKK

Sequences:

>Translated_303_residues
MKQVAILTTLIIFTSCASVESKRNISASGDPSEIFFEKEIAPMDKAGSNSVSQKPGRRSFEEELRVEKYAKAQPPEKTNS
GDFDEIGMSSWYGAKFHGKPTASGEKFDKTKLTAAHPTLPLGSIIRVQNLENQKEVLVRVNDRGPFVKDRIIDLSEKAAD
TLDFKDIGIAKVGIKVVKLGGAAGEESEDLENVDDEENALLEDEKPEKLNPQKSDYPNKSLSDGKYVKGSPKGYTVQVGV
FRDQTKAEAYKSNLGQEYGEKTFLFARDGLFVIQLGDFASRTDAESLKSKLKTDGIDCFIPKK
>Mature_303_residues
MKQVAILTTLIIFTSCASVESKRNISASGDPSEIFFEKEIAPMDKAGSNSVSQKPGRRSFEEELRVEKYAKAQPPEKTNS
GDFDEIGMSSWYGAKFHGKPTASGEKFDKTKLTAAHPTLPLGSIIRVQNLENQKEVLVRVNDRGPFVKDRIIDLSEKAAD
TLDFKDIGIAKVGIKVVKLGGAAGEESEDLENVDDEENALLEDEKPEKLNPQKSDYPNKSLSDGKYVKGSPKGYTVQVGV
FRDQTKAEAYKSNLGQEYGEKTFLFARDGLFVIQLGDFASRTDAESLKSKLKTDGIDCFIPKK

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=84, Percent_Identity=50, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 33385; Mature: 33385

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQVAILTTLIIFTSCASVESKRNISASGDPSEIFFEKEIAPMDKAGSNSVSQKPGRRSF
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEECCCCCCCCCCCCCCCCCCCCCCH
EEELRVEKYAKAQPPEKTNSGDFDEIGMSSWYGAKFHGKPTASGEKFDKTKLTAAHPTLP
HHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCEECCCCCCCCCCCCCCEEEECCCCCC
LGSIIRVQNLENQKEVLVRVNDRGPFVKDRIIDLSEKAADTLDFKDIGIAKVGIKVVKLG
CCCEEEECCCCCCEEEEEEECCCCCCHHHHHHCCHHHHHCCCCCCCCCEEEECEEEEEEC
GAAGEESEDLENVDDEENALLEDEKPEKLNPQKSDYPNKSLSDGKYVKGSPKGYTVQVGV
CCCCCCCHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEE
FRDQTKAEAYKSNLGQEYGEKTFLFARDGLFVIQLGDFASRTDAESLKSKLKTDGIDCFI
ECCHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEE
PKK
CCC
>Mature Secondary Structure
MKQVAILTTLIIFTSCASVESKRNISASGDPSEIFFEKEIAPMDKAGSNSVSQKPGRRSF
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEECCCCCCCCCCCCCCCCCCCCCCH
EEELRVEKYAKAQPPEKTNSGDFDEIGMSSWYGAKFHGKPTASGEKFDKTKLTAAHPTLP
HHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCEECCCCCCCCCCCCCCEEEECCCCCC
LGSIIRVQNLENQKEVLVRVNDRGPFVKDRIIDLSEKAADTLDFKDIGIAKVGIKVVKLG
CCCEEEECCCCCCEEEEEEECCCCCCHHHHHHCCHHHHHCCCCCCCCCEEEECEEEEEEC
GAAGEESEDLENVDDEENALLEDEKPEKLNPQKSDYPNKSLSDGKYVKGSPKGYTVQVGV
CCCCCCCHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEE
FRDQTKAEAYKSNLGQEYGEKTFLFARDGLFVIQLGDFASRTDAESLKSKLKTDGIDCFI
ECCHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEE
PKK
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10688204 [H]