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The map label for this gene is ygeR [H]

Identifier: 116329258

GI number: 116329258

Start: 3198094

End: 3198756

Strand: Direct

Name: ygeR [H]

Synonym: LBL_2697

Alternate gene names: 116329258

Gene position: 3198094-3198756 (Clockwise)

Preceding gene: 116329257

Following gene: 116329259

Centisome position: 88.48

GC content: 40.27

Gene sequence:

>663_bases
ATGGTCTTTCGACGTTTTGGAATTCTAACGTTTTTTTTAATCCTTTCTCGGATCTTTGCGGCAGGATCACAGCAGAATGT
TTCCCTTTACACCGTCCAAAAGGGAGATACATATTATTCTTTAGGAAAAAAATTCAAAGTCGATTATCATAAGATTATGG
AATGGAATGGAAAAAAGAATACGAATTCGCTACACCCCGGAGAAACTTTAAAAATCCAAAAACCGGCAGCACTAGAAAAC
GAAAAACTCTCTTCTAAAAATACAAAATCGACTCTTAAAAAGGAAAAAGCCGTCGAATCCTCGCGACCCGTTCTTAAATT
CCCTTTAAAAAACCGTCCCCCCATACAAAATCATTTTACAAAACTCAGCTTCGCTCCTCACAAAGGAGTTTTATTCAAAT
CTTCCAGACACAATCAGGTTCGCCCGGCTTCTCCCGGAAAAGTATTGGTCGTGGACGAGATGGAAGGATACAAAAAATAC
GTGATCATAGAGCATAAGAACGGCTATTCTACGGTGTATGCGAATTTAAAAACCGTCTCCGTAAACGAAGGAGAAACCGT
GAGTTCCTCAAAGATATTAGGCTTTTTGGAATCCGGAAAAGGACTTTACTTCCAGCTCAATCACGGTAGCTCCGCGATCG
ACCCAAGTTTACAAATCCGCTAG

Upstream 100 bases:

>100_bases
TCTTTTTTCTCCGAAAAAGGGAGCCAGAAGGCTCCCTTTTTTTGTCCTCCGAGCCTTTCCTGAAGCAAGCTGATCAAGAA
ACCTGCCGATATTGAAAGAA

Downstream 100 bases:

>100_bases
ACTTGGCTTCAAAAAATATGGAATACGAACTCGTAAACGCCTGCATTGTAACCAAAGACCGATGGATTCCAAACGGAAGT
GTTGTAGTGAAAGACGGTCT

Product: M23/M37 family metallopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MVFRRFGILTFFLILSRIFAAGSQQNVSLYTVQKGDTYYSLGKKFKVDYHKIMEWNGKKNTNSLHPGETLKIQKPAALEN
EKLSSKNTKSTLKKEKAVESSRPVLKFPLKNRPPIQNHFTKLSFAPHKGVLFKSSRHNQVRPASPGKVLVVDEMEGYKKY
VIIEHKNGYSTVYANLKTVSVNEGETVSSSKILGFLESGKGLYFQLNHGSSAIDPSLQIR

Sequences:

>Translated_220_residues
MVFRRFGILTFFLILSRIFAAGSQQNVSLYTVQKGDTYYSLGKKFKVDYHKIMEWNGKKNTNSLHPGETLKIQKPAALEN
EKLSSKNTKSTLKKEKAVESSRPVLKFPLKNRPPIQNHFTKLSFAPHKGVLFKSSRHNQVRPASPGKVLVVDEMEGYKKY
VIIEHKNGYSTVYANLKTVSVNEGETVSSSKILGFLESGKGLYFQLNHGSSAIDPSLQIR
>Mature_220_residues
MVFRRFGILTFFLILSRIFAAGSQQNVSLYTVQKGDTYYSLGKKFKVDYHKIMEWNGKKNTNSLHPGETLKIQKPAALEN
EKLSSKNTKSTLKKEKAVESSRPVLKFPLKNRPPIQNHFTKLSFAPHKGVLFKSSRHNQVRPASPGKVLVVDEMEGYKKY
VIIEHKNGYSTVYANLKTVSVNEGETVSSSKILGFLESGKGLYFQLNHGSSAIDPSLQIR

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082174, Length=205, Percent_Identity=27.3170731707317, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 24810; Mature: 24810

Theoretical pI: Translated: 10.63; Mature: 10.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFRRFGILTFFLILSRIFAAGSQQNVSLYTVQKGDTYYSLGKKFKVDYHKIMEWNGKKN
CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEECCCEEECCHHEEEEECCCCC
TNSLHPGETLKIQKPAALENEKLSSKNTKSTLKKEKAVESSRPVLKFPLKNRPPIQNHFT
CCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHCE
KLSFAPHKGVLFKSSRHNQVRPASPGKVLVVDEMEGYKKYVIIEHKNGYSTVYANLKTVS
EEEECCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEEE
VNEGETVSSSKILGFLESGKGLYFQLNHGSSAIDPSLQIR
CCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCEEEC
>Mature Secondary Structure
MVFRRFGILTFFLILSRIFAAGSQQNVSLYTVQKGDTYYSLGKKFKVDYHKIMEWNGKKN
CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEECCCEEECCHHEEEEECCCCC
TNSLHPGETLKIQKPAALENEKLSSKNTKSTLKKEKAVESSRPVLKFPLKNRPPIQNHFT
CCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHCE
KLSFAPHKGVLFKSSRHNQVRPASPGKVLVVDEMEGYKKYVIIEHKNGYSTVYANLKTVS
EEEECCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEEE
VNEGETVSSSKILGFLESGKGLYFQLNHGSSAIDPSLQIR
CCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]