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The map label for this gene is rbpA [H]

Identifier: 116329160

GI number: 116329160

Start: 3062636

End: 3062896

Strand: Direct

Name: rbpA [H]

Synonym: LBL_2587

Alternate gene names: 116329160

Gene position: 3062636-3062896 (Clockwise)

Preceding gene: 116329159

Following gene: 116329165

Centisome position: 84.73

GC content: 37.16

Gene sequence:

>261_bases
ATGCCGATCAACATTTATGTAGGAAATCTTTCTTACGATCTAAACGAAGGAACGTTAGGTGATCTTTTCAGAGTTCATGG
AACCGTTAATTCCGTAAAAATCATCACGGATCAATATTCCGGAAAATCCAAAGGATTCGGTTTTGTCGAAATGCCCAACA
AGGACGAAGCCGACAAAGCGATCAAAGATTTAGACGGAAAAAACGTTCTTACACGTAATTTGAAAGTAAACGTTGCAAAA
CCAAAAAACGACAGATTTTAA

Upstream 100 bases:

>100_bases
CTAAGTCCTGCATCTCTAAAATTCTTCTACATCCTGTTTGCGGGAAAAGCTGTTTTTAAATCTAGATAGCTGATCTAATT
TACAACTATAAGAGGTAAAT

Downstream 100 bases:

>100_bases
TTTAGAAATTCATCGTTTTTAAATCGAATTCGATTTTTCAAAACCGCTTCGAAAAAATTCTTTTTCAGGCGGTTTGTGAA
TAGATGGACTTGCAATCCCG

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 86; Mature: 85

Protein sequence:

>86_residues
MPINIYVGNLSYDLNEGTLGDLFRVHGTVNSVKIITDQYSGKSKGFGFVEMPNKDEADKAIKDLDGKNVLTRNLKVNVAK
PKNDRF

Sequences:

>Translated_86_residues
MPINIYVGNLSYDLNEGTLGDLFRVHGTVNSVKIITDQYSGKSKGFGFVEMPNKDEADKAIKDLDGKNVLTRNLKVNVAK
PKNDRF
>Mature_85_residues
PINIYVGNLSYDLNEGTLGDLFRVHGTVNSVKIITDQYSGKSKGFGFVEMPNKDEADKAIKDLDGKNVLTRNLKVNVAKP
KNDRF

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI46367787, Length=82, Percent_Identity=40.2439024390244, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI45238849, Length=82, Percent_Identity=40.2439024390244, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI221316765, Length=73, Percent_Identity=49.3150684931507, Blast_Score=62, Evalue=8e-11,
Organism=Homo sapiens, GI221316769, Length=73, Percent_Identity=49.3150684931507, Blast_Score=62, Evalue=9e-11,
Organism=Homo sapiens, GI221316767, Length=73, Percent_Identity=49.3150684931507, Blast_Score=62, Evalue=9e-11,
Organism=Homo sapiens, GI221316773, Length=73, Percent_Identity=49.3150684931507, Blast_Score=62, Evalue=9e-11,
Organism=Homo sapiens, GI221316771, Length=73, Percent_Identity=49.3150684931507, Blast_Score=62, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=40.7894736842105, Blast_Score=69, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17567133, Length=83, Percent_Identity=40.9638554216867, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17567131, Length=83, Percent_Identity=40.9638554216867, Blast_Score=66, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193209459, Length=80, Percent_Identity=40, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=38.961038961039, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=33.7662337662338, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17508587, Length=82, Percent_Identity=34.1463414634146, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71993217, Length=83, Percent_Identity=37.3493975903614, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71993203, Length=83, Percent_Identity=37.3493975903614, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI71993209, Length=83, Percent_Identity=37.3493975903614, Blast_Score=62, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24582417, Length=75, Percent_Identity=36, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI45550943, Length=75, Percent_Identity=36, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582419, Length=75, Percent_Identity=36, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582423, Length=75, Percent_Identity=36, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582421, Length=75, Percent_Identity=36, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221330652, Length=81, Percent_Identity=45.679012345679, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI62471589, Length=81, Percent_Identity=45.679012345679, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI19549692, Length=81, Percent_Identity=45.679012345679, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI19549690, Length=81, Percent_Identity=45.679012345679, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI221330653, Length=81, Percent_Identity=45.679012345679, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI19549688, Length=81, Percent_Identity=45.679012345679, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI19549694, Length=81, Percent_Identity=45.679012345679, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI19920866, Length=75, Percent_Identity=36, Blast_Score=62, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24582412, Length=75, Percent_Identity=36, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 9574; Mature: 9443

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPINIYVGNLSYDLNEGTLGDLFRVHGTVNSVKIITDQYSGKSKGFGFVEMPNKDEADKA
CCEEEEECCEEEECCCCCCCCEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCCCCHHH
IKDLDGKNVLTRNLKVNVAKPKNDRF
HHCCCCCCEEEECEEEEEECCCCCCC
>Mature Secondary Structure 
PINIYVGNLSYDLNEGTLGDLFRVHGTVNSVKIITDQYSGKSKGFGFVEMPNKDEADKA
CEEEEECCEEEECCCCCCCCEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCCCCHHH
IKDLDGKNVLTRNLKVNVAKPKNDRF
HHCCCCCCEEEECEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8704138; 8590279; 8905231 [H]