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The map label for this gene is fliD [H]

Identifier: 116329033

GI number: 116329033

Start: 2887447

End: 2889366

Strand: Reverse

Name: fliD [H]

Synonym: LBL_2438

Alternate gene names: 116329033

Gene position: 2889366-2887447 (Counterclockwise)

Preceding gene: 116329047

Following gene: 116329032

Centisome position: 79.94

GC content: 46.25

Gene sequence:

>1920_bases
ATGCCCGCATTTACGATTCCAGGACTTAGCTCCGGTCAAGACACAAATTTGATCGTAAAAAAATTGGTGGAACTGGAAGC
AAAGCCGATCCGTCGACTTGAGCAACAGAATTCGTTTAACAAAGCTCAAGTAAAAGCGTGGAACGAGCTCAAAGTAGTTA
CGACCGACTTGCAGAATAAAACAAGAGCGCTCATATCTTTTACCGCTCCTTTTGCGATGAAGAATATCGTCTCCGAACCG
GAAGGTGTCGTGAGTGGGGACGCTTCTCGTTCTGTGAGCGCCGGTAAACGTAAAATTGAAATTAAGGAACTTGCAACTTA
TCATCAAATCTCCGGAGAAAAAACCGATGCGAACAAACAGATTCCTGCAGGTAAGTTCAAAATCTTTTCGGGAGATTCCG
AGAAGGAAATCGAATTCTCCGGAGGAACGATTCGAGATTTGGCTTCTTCCATTAAAATTTCCGCCGCGGGTCTTGTGAAC
ACGGGTCTTGTCAAAGTGGACGGCGATAATTACGTTCTTACGTTGACTGCGGGTTTGTCGGGCAAAGAGCAGAGACTGAA
ATTCGAAGATACGAACGGAATTTTACAAGCGGTCAATCTCGTGGGTGCGACCGAACCGGCGGATCCTCCGAAGGTGTTGA
ACTTTTTTCCAGGAGCGGATCAAACCTCCGTTTTTCAACCGGAGAAATACGGAATCGCAACGGATACAAAGCCGGTTTAC
AAGGAAGAAAACGACAAGAAGTGGATGGAGATCGCGAGTGTGGGTTCGTTTCAGTTCGGAATTCCCACCACGGAGTTGAA
AAAGAACGCGAGGGTAGAACTCTTAACTTCCACCGAGTTCGCGCCGGAAGACAAACTAGAATTAGGAATTCTTTATAGAG
AAAACAATAAGGAAAAGATGATTTTCGAAACGGCTTCCAAACAGGAAGGAAAAATCGTCCTCAATCTGAAGTCCTTCCCT
TCCGGTCGGAAGGCCCATAAGATTCTTTTTGTAAATTCGAGCGGTAAAACCGTAATGTTAGATTCTTTTCATGTAGTGAT
TCCGGGAGAATTCAAAGGAGCCAAACCGGCAAAGGAAATCGCCGAAGCGAAAGACGCGGTGTTTCTGATCGACGGGATCG
AGGTCAATCGCCCCAAAAACGAGGGACTTACGGATGTTTTGGACGGAGTTTCTTTGAACCTTCTCAAAAAAACCGAAGCG
CCCGCGAGCATTGATATCAAAACGGATTTGGACAAAGGTCTCGAGATGCTCAAGGAATTTGTCGCCGCATACAACACCGT
TTTGAAATTCGGAAAGGACGCGACCGCGGTGGATAAGAACGCGCAGATCAAGGACGGAAAAGAGGACTCCGGTGAAATCG
GTCAGAGTTTTTGGGAAGGAAAATCTAAATCCGGTCTTTTATCAGGAGAACATACCGTGCTTCGTTTGATCGCCGGAATG
AAAACCGTAGCAAGTTCTTCCTATCCCGTAAGCGGGGAAAACGCGGTGAGAATGTTAAGCGACATCGGAATCAGCACCGG
AAACGTCGGGAGCAAATGGGCCAATATTCAGGACGGGTTCCTGATTCTGGACGAAGAAAAACTCCGTTCTAAACTTGCGG
AAAATCCGGATTCCGTGCGGAATCTTTTTGCGATTGATACGAACTCCGATGCGAGAATGGATACGGGAGTCGCCGTCGAT
CTTCTCGAACACATCAAACCCTACACTCAGGATACGGGTGGGCTTGTTTCCGGAAAGGTGAAGATGCTCGAAGAACAAGT
CACCGATAACAACAAGAAGATTAAGGAATACGAAAACCATCTCGTGAGTTACGAGAAAAAACTGAAGTCCAAGTTTCTTT
ATATGGAACAAGGAGTCGGTAAAAACAAAGCGGTCGGGGCCTATTTGAATAATAATCTCAAAGGCGCCAAAAACGAGTGA

Upstream 100 bases:

>100_bases
CAGTTGTTTAACATCGGCAATCCGTTTTTCTACCTTCGAATTTTTTCATTTTCTATCATCTTTTTTTCGATTCGACCGAT
TAAGAATGTAGGAGGATAAG

Downstream 100 bases:

>100_bases
TCCAAACAGGAGAGTGAAATGGAAATTTACATCAACGAACATCTGTTAGATAGTTCTCTGGAAAACGAAAAAAAGTTAGG
CGAAGTTTTCGGCGAGATCA

Product: flagellar hook-associated protein FliD

Products: NA

Alternate protein names: HAP2; Filament cap protein [H]

Number of amino acids: Translated: 639; Mature: 638

Protein sequence:

>639_residues
MPAFTIPGLSSGQDTNLIVKKLVELEAKPIRRLEQQNSFNKAQVKAWNELKVVTTDLQNKTRALISFTAPFAMKNIVSEP
EGVVSGDASRSVSAGKRKIEIKELATYHQISGEKTDANKQIPAGKFKIFSGDSEKEIEFSGGTIRDLASSIKISAAGLVN
TGLVKVDGDNYVLTLTAGLSGKEQRLKFEDTNGILQAVNLVGATEPADPPKVLNFFPGADQTSVFQPEKYGIATDTKPVY
KEENDKKWMEIASVGSFQFGIPTTELKKNARVELLTSTEFAPEDKLELGILYRENNKEKMIFETASKQEGKIVLNLKSFP
SGRKAHKILFVNSSGKTVMLDSFHVVIPGEFKGAKPAKEIAEAKDAVFLIDGIEVNRPKNEGLTDVLDGVSLNLLKKTEA
PASIDIKTDLDKGLEMLKEFVAAYNTVLKFGKDATAVDKNAQIKDGKEDSGEIGQSFWEGKSKSGLLSGEHTVLRLIAGM
KTVASSSYPVSGENAVRMLSDIGISTGNVGSKWANIQDGFLILDEEKLRSKLAENPDSVRNLFAIDTNSDARMDTGVAVD
LLEHIKPYTQDTGGLVSGKVKMLEEQVTDNNKKIKEYENHLVSYEKKLKSKFLYMEQGVGKNKAVGAYLNNNLKGAKNE

Sequences:

>Translated_639_residues
MPAFTIPGLSSGQDTNLIVKKLVELEAKPIRRLEQQNSFNKAQVKAWNELKVVTTDLQNKTRALISFTAPFAMKNIVSEP
EGVVSGDASRSVSAGKRKIEIKELATYHQISGEKTDANKQIPAGKFKIFSGDSEKEIEFSGGTIRDLASSIKISAAGLVN
TGLVKVDGDNYVLTLTAGLSGKEQRLKFEDTNGILQAVNLVGATEPADPPKVLNFFPGADQTSVFQPEKYGIATDTKPVY
KEENDKKWMEIASVGSFQFGIPTTELKKNARVELLTSTEFAPEDKLELGILYRENNKEKMIFETASKQEGKIVLNLKSFP
SGRKAHKILFVNSSGKTVMLDSFHVVIPGEFKGAKPAKEIAEAKDAVFLIDGIEVNRPKNEGLTDVLDGVSLNLLKKTEA
PASIDIKTDLDKGLEMLKEFVAAYNTVLKFGKDATAVDKNAQIKDGKEDSGEIGQSFWEGKSKSGLLSGEHTVLRLIAGM
KTVASSSYPVSGENAVRMLSDIGISTGNVGSKWANIQDGFLILDEEKLRSKLAENPDSVRNLFAIDTNSDARMDTGVAVD
LLEHIKPYTQDTGGLVSGKVKMLEEQVTDNNKKIKEYENHLVSYEKKLKSKFLYMEQGVGKNKAVGAYLNNNLKGAKNE
>Mature_638_residues
PAFTIPGLSSGQDTNLIVKKLVELEAKPIRRLEQQNSFNKAQVKAWNELKVVTTDLQNKTRALISFTAPFAMKNIVSEPE
GVVSGDASRSVSAGKRKIEIKELATYHQISGEKTDANKQIPAGKFKIFSGDSEKEIEFSGGTIRDLASSIKISAAGLVNT
GLVKVDGDNYVLTLTAGLSGKEQRLKFEDTNGILQAVNLVGATEPADPPKVLNFFPGADQTSVFQPEKYGIATDTKPVYK
EENDKKWMEIASVGSFQFGIPTTELKKNARVELLTSTEFAPEDKLELGILYRENNKEKMIFETASKQEGKIVLNLKSFPS
GRKAHKILFVNSSGKTVMLDSFHVVIPGEFKGAKPAKEIAEAKDAVFLIDGIEVNRPKNEGLTDVLDGVSLNLLKKTEAP
ASIDIKTDLDKGLEMLKEFVAAYNTVLKFGKDATAVDKNAQIKDGKEDSGEIGQSFWEGKSKSGLLSGEHTVLRLIAGMK
TVASSSYPVSGENAVRMLSDIGISTGNVGSKWANIQDGFLILDEEKLRSKLAENPDSVRNLFAIDTNSDARMDTGVAVDL
LEHIKPYTQDTGGLVSGKVKMLEEQVTDNNKKIKEYENHLVSYEKKLKSKFLYMEQGVGKNKAVGAYLNNNLKGAKNE

Specific function: Required for the morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the

COG id: COG1345

COG function: function code N; Flagellar capping protein

Gene ontology:

Cell location: Periplasmic flagellum. Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010809
- InterPro:   IPR003481 [H]

Pfam domain/function: PF07195 FliD_C; PF02465 FliD_N [H]

EC number: NA

Molecular weight: Translated: 69797; Mature: 69666

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAFTIPGLSSGQDTNLIVKKLVELEAKPIRRLEQQNSFNKAQVKAWNELKVVTTDLQNK
CCCEECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHEECCCEEEEEECCCCC
TRALISFTAPFAMKNIVSEPEGVVSGDASRSVSAGKRKIEIKELATYHQISGEKTDANKQ
CEEEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCCC
IPAGKFKIFSGDSEKEIEFSGGTIRDLASSIKISAAGLVNTGLVKVDGDNYVLTLTAGLS
CCCCEEEEECCCCCCEEEECCCHHHHHHHHHEEEECCEEECCEEEECCCCEEEEEEECCC
GKEQRLKFEDTNGILQAVNLVGATEPADPPKVLNFFPGADQTSVFQPEKYGIATDTKPVY
CCHHEEEEECCCHHHHHHHHHCCCCCCCCHHHHEECCCCCCCCCCCCHHCCCCCCCCCCC
KEENDKKWMEIASVGSFQFGIPTTELKKNARVELLTSTEFAPEDKLELGILYRENNKEKM
CCCCCHHHHHHHHCCCEEECCCHHHHCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCEE
IFETASKQEGKIVLNLKSFPSGRKAHKILFVNSSGKTVMLDSFHVVIPGEFKGAKPAKEI
EEEECCCCCCEEEEEECCCCCCCCEEEEEEEECCCCEEEEEEEEEEECCCCCCCCHHHHH
AEAKDAVFLIDGIEVNRPKNEGLTDVLDGVSLNLLKKTEAPASIDIKTDLDKGLEMLKEF
HHCCCCEEEEECEEECCCCCCCHHHHHCCCEEEEEECCCCCCEEEECCCHHHHHHHHHHH
VAAYNTVLKFGKDATAVDKNAQIKDGKEDSGEIGQSFWEGKSKSGLLSGEHTVLRLIAGM
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
KTVASSSYPVSGENAVRMLSDIGISTGNVGSKWANIQDGFLILDEEKLRSKLAENPDSVR
HHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHCCCCHHH
NLFAIDTNSDARMDTGVAVDLLEHIKPYTQDTGGLVSGKVKMLEEQVTDNNKKIKEYENH
EEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHCCCCHHHHHHHHH
LVSYEKKLKSKFLYMEQGVGKNKAVGAYLNNNLKGAKNE
HHHHHHHHHHHHHHHHCCCCCCCEEEHEECCCCCCCCCC
>Mature Secondary Structure 
PAFTIPGLSSGQDTNLIVKKLVELEAKPIRRLEQQNSFNKAQVKAWNELKVVTTDLQNK
CCEECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHEECCCEEEEEECCCCC
TRALISFTAPFAMKNIVSEPEGVVSGDASRSVSAGKRKIEIKELATYHQISGEKTDANKQ
CEEEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCCC
IPAGKFKIFSGDSEKEIEFSGGTIRDLASSIKISAAGLVNTGLVKVDGDNYVLTLTAGLS
CCCCEEEEECCCCCCEEEECCCHHHHHHHHHEEEECCEEECCEEEECCCCEEEEEEECCC
GKEQRLKFEDTNGILQAVNLVGATEPADPPKVLNFFPGADQTSVFQPEKYGIATDTKPVY
CCHHEEEEECCCHHHHHHHHHCCCCCCCCHHHHEECCCCCCCCCCCCHHCCCCCCCCCCC
KEENDKKWMEIASVGSFQFGIPTTELKKNARVELLTSTEFAPEDKLELGILYRENNKEKM
CCCCCHHHHHHHHCCCEEECCCHHHHCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCEE
IFETASKQEGKIVLNLKSFPSGRKAHKILFVNSSGKTVMLDSFHVVIPGEFKGAKPAKEI
EEEECCCCCCEEEEEECCCCCCCCEEEEEEEECCCCEEEEEEEEEEECCCCCCCCHHHHH
AEAKDAVFLIDGIEVNRPKNEGLTDVLDGVSLNLLKKTEAPASIDIKTDLDKGLEMLKEF
HHCCCCEEEEECEEECCCCCCCHHHHHCCCEEEEEECCCCCCEEEECCCHHHHHHHHHHH
VAAYNTVLKFGKDATAVDKNAQIKDGKEDSGEIGQSFWEGKSKSGLLSGEHTVLRLIAGM
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
KTVASSSYPVSGENAVRMLSDIGISTGNVGSKWANIQDGFLILDEEKLRSKLAENPDSVR
HHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHCCCCHHH
NLFAIDTNSDARMDTGVAVDLLEHIKPYTQDTGGLVSGKVKMLEEQVTDNNKKIKEYENH
EEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHCCCCHHHHHHHHH
LVSYEKKLKSKFLYMEQGVGKNKAVGAYLNNNLKGAKNE
HHHHHHHHHHHHHHHHCCCCCCCEEEHEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9665876 [H]