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The map label for this gene is 116329008

Identifier: 116329008

GI number: 116329008

Start: 2860038

End: 2860616

Strand: Reverse

Name: 116329008

Synonym: LBL_2412

Alternate gene names: NA

Gene position: 2860616-2860038 (Counterclockwise)

Preceding gene: 116329009

Following gene: 116329007

Centisome position: 79.14

GC content: 39.03

Gene sequence:

>579_bases
ATGAATCTGAAAAAAGGGAATTCGGAAATTTACGGGTTAAAAGACATTCTCACGGATTTTGAAATGAGGTCTCTCACAGA
CGCGAGTAGAAACAATCCCGAACATTTTGTATGGATTCGATGCCTAATTATGTTCGGATTAAAATCAGAAGAGTTGGTTT
CTTTACGTTGTAACGATGTCGACTTGGAAAGTAAGTTATTGAGGATTCGCGGATTTCAAGGGAGAGAAGATCGTTACCTC
AAAATTTCCCCTTTTTTACTTCGGGATTTTTACGGAGCGACTCGGGGTAAAACTTCGGAGGAATACGTATTTCCGGGAAG
GAAGGGCAAGTTACATCCCAAAACGATTCAGGAACTTTTCGAAAAATTAAAACGTAAAACGAGTATCGAAGTGAGTTGTT
CTAAAATTCGAGAAACGATAGCCGTTCGACTTCACTCGAGAGGGGATTCGATTCAATTTATCGGCGAATTTTTAGGATTG
AAAACGAGGCGCGCCGTCTATAAATTGATCGGGCAAAAATCGAGGTTTAGATCGGTGAGAAATTTTTCCTTAGATGAAAT
TATAGATATTGGAACTTAA

Upstream 100 bases:

>100_bases
GAAAATATTTTCTTTCTTTCGTCGAAAAAGTTAATTTTTGTTGGCATTATTGCCGCAATGTAGGCAAATAAAGCCGAATT
TGAAAGGAATAGTTCTTTTT

Downstream 100 bases:

>100_bases
AAATGAGTTGTAAACGAATTCCGAAACCTTAATTTAGGCTTAATTCTCCAAAAGGAAGCCATTTTTTGGAAATCAAAACG
AAAAAGATTGGTAAACATAC

Product: XerD-like integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MNLKKGNSEIYGLKDILTDFEMRSLTDASRNNPEHFVWIRCLIMFGLKSEELVSLRCNDVDLESKLLRIRGFQGREDRYL
KISPFLLRDFYGATRGKTSEEYVFPGRKGKLHPKTIQELFEKLKRKTSIEVSCSKIRETIAVRLHSRGDSIQFIGEFLGL
KTRRAVYKLIGQKSRFRSVRNFSLDEIIDIGT

Sequences:

>Translated_192_residues
MNLKKGNSEIYGLKDILTDFEMRSLTDASRNNPEHFVWIRCLIMFGLKSEELVSLRCNDVDLESKLLRIRGFQGREDRYL
KISPFLLRDFYGATRGKTSEEYVFPGRKGKLHPKTIQELFEKLKRKTSIEVSCSKIRETIAVRLHSRGDSIQFIGEFLGL
KTRRAVYKLIGQKSRFRSVRNFSLDEIIDIGT
>Mature_192_residues
MNLKKGNSEIYGLKDILTDFEMRSLTDASRNNPEHFVWIRCLIMFGLKSEELVSLRCNDVDLESKLLRIRGFQGREDRYL
KISPFLLRDFYGATRGKTSEEYVFPGRKGKLHPKTIQELFEKLKRKTSIEVSCSKIRETIAVRLHSRGDSIQFIGEFLGL
KTRRAVYKLIGQKSRFRSVRNFSLDEIIDIGT

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 22356; Mature: 22356

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLKKGNSEIYGLKDILTDFEMRSLTDASRNNPEHFVWIRCLIMFGLKSEELVSLRCNDV
CCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCC
DLESKLLRIRGFQGREDRYLKISPFLLRDFYGATRGKTSEEYVFPGRKGKLHPKTIQELF
CHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHH
EKLKRKTSIEVSCSKIRETIAVRLHSRGDSIQFIGEFLGLKTRRAVYKLIGQKSRFRSVR
HHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHH
NFSLDEIIDIGT
CCCHHHHHCCCC
>Mature Secondary Structure
MNLKKGNSEIYGLKDILTDFEMRSLTDASRNNPEHFVWIRCLIMFGLKSEELVSLRCNDV
CCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCC
DLESKLLRIRGFQGREDRYLKISPFLLRDFYGATRGKTSEEYVFPGRKGKLHPKTIQELF
CHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHH
EKLKRKTSIEVSCSKIRETIAVRLHSRGDSIQFIGEFLGLKTRRAVYKLIGQKSRFRSVR
HHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHH
NFSLDEIIDIGT
CCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]