| Definition | Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008508 |
| Length | 3,614,446 |
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The map label for this gene is yfmR [H]
Identifier: 116328550
GI number: 116328550
Start: 2221739
End: 2223607
Strand: Direct
Name: yfmR [H]
Synonym: LBL_1905
Alternate gene names: 116328550
Gene position: 2221739-2223607 (Clockwise)
Preceding gene: 116328549
Following gene: 116328554
Centisome position: 61.47
GC content: 41.2
Gene sequence:
>1869_bases ATGAATTTAATATCTGTCGACAAGATCTCCAAAGAAATCGGTTCTAAAGTTTTATTCAATCAAATCAGTTTTGGAATCAA CGAAGGGGAAAGAATCGGAATTCTCGGAATCAACGGTTCCGGAAAAACGACCCTTTTGAAAATACTTGCCGGTTTAGACA TTCCCGACAGCGGGCAGGTCATGAAGAATAAAATTCTTCGGATCGCGGTTTTATCTCAATCTCCCTCTTTTGATCCAAAT CATACCGTCTTGGAACATATCTTTTCCGGTTCGAGCTCGATCTTGGAAACGATTCGGTCTTATGAAGCGGTTTGTGAACG TTTGGATTCGGGAGGCGGCGCGGAGGAAGAATACAATCGTTTGATGTTGGAGATGGATCGGCTTGGAGCTTGGGAACTGG AGTCTTGGTATCGATCTCTTTTAAAAGAATTGAATATACGGGATCTTTCGATTCGAATGGGTTCTTTATCCGGAGGAATG CTCAAGAAAGTTGCCTTGGTTCAGATCTTAATCGAAGAGTCTAATCTTCTTGTTCTCGACGAGCCGACCAATCACTTGGA CGTGGATACGATTCTCTGGCTTCAAGACTACCTGATCGAAACTAAAAAAGCTGTTCTTCTCGTCACTCACGATCGTTATT TTTTAGAGGAGGTCACGGAGCGAATTCTAGAATTGGAAAATGGAAGTTTATTTTCATTTCCGGGGAACTTCGGATTTTAT CTGGAGAAAAAAAACGAAGCCGAAGTTATCCGCGAAAAAGCGGAACAGAAAGAAAAACAATTTCTCAAAAAAGAGTTGGA GTGGCTTCGAAGACAACCGAAAGCGAGGGGAACCAAACAAAAGGGAAGAACCGATCGTGCTCTCGAGGTTTTGAATCGTA AAAAGGCGGGAAAAGAAATCGTTTTGGATTTTTCCGTTTCGGGCAAACGGCTCGGAAAAAAAATTCTCGAATTGAAAAAT CTGCACAAGTCATATCATAAGTCCATTATATCAAATTTTTCTTATACGTTTAAGAATGGGGAACGGATCGGGATCGTAGG TCCGAACGGGTCGGGAAAATCGACTCTTCTCGACATAATTGTGGGTAGAACAAAACCGGATTCGGGAGACGTAAGCCTCG GAATGAATACGAGTTTTGGTTATTTCGATCAAGTTTCCAAAGAGCTTTCCGGTGATATGAGAGTGATCGAATATATCAAG AAGGAATGTGGCGTTTCGATCAAAATGAGCGATGATCGCGTTTTAAGTGCGGCCGACATGCTCGAACTATTCCTTTTCGA TACAAGATTACAGGCCGGTTATATCAAGAATTTATCGGGTGGAGAAAAAAGGAGACTTTATCTTGTTTCCATTCTGATGA CTGATCCGAATTTTTTGATTTTGGACGAACCTACGAACGATTTGGACATTCGAACCCTTTCGGTTTTAGAGGAATTTTTG ACCGAGTTCGGGGGCTGTGTTCTCGTCGTTTCACATGATCGTTATTTTATGGATCGGACGGTGGATTATCTGTTTATTTT TCAGGGAGAGGGAATCGTTGAAAAGTTTCCCGGAAATTATTCCGAATATTTGGAATATAAGAATTATCTCAACAAACAAA AGGAAAAAAAGGAAATTGAGATAAAACCGAAGGAAATCGATTCTTCAAAAACTAAAAAGGGATTGAGTTTCAATCAGAAG AAAGAATTGGACGTTTTGGAAACGGAGATCTTTTCTCTGGAAGAGGAAGAGCGTAAGCTCACCGAAGTTCTTCAATCCGG AATCGGAAAACCGAACGAGTTGGCGACCGTAGGTAATCGACTTATGGAGATTCATGCCGTTCTACCTTCGAAGTTGGAAC GTTGGGAAGAACTTCAGAATTTACTTTAA
Upstream 100 bases:
>100_bases CCCACAGGAGAGGAAAGAGGAACGAAATTTCAAATCCGATTTAAAACTTAAAAACACTTGTCTTCAGTAATTCACTCCGG AATCTGAAAGTATCCGGTCT
Downstream 100 bases:
>100_bases ATCAGGGGATTGGTGAACCGATTTTACTATGGAGGAATCTTTCGTGATTGGAATGTTCCGATTGTCGTAAAAGTTATAGA AAAATTTTCATTCCTATTTC
Product: ATP-binding protein of an ABC transporter complex
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 622; Mature: 622
Protein sequence:
>622_residues MNLISVDKISKEIGSKVLFNQISFGINEGERIGILGINGSGKTTLLKILAGLDIPDSGQVMKNKILRIAVLSQSPSFDPN HTVLEHIFSGSSSILETIRSYEAVCERLDSGGGAEEEYNRLMLEMDRLGAWELESWYRSLLKELNIRDLSIRMGSLSGGM LKKVALVQILIEESNLLVLDEPTNHLDVDTILWLQDYLIETKKAVLLVTHDRYFLEEVTERILELENGSLFSFPGNFGFY LEKKNEAEVIREKAEQKEKQFLKKELEWLRRQPKARGTKQKGRTDRALEVLNRKKAGKEIVLDFSVSGKRLGKKILELKN LHKSYHKSIISNFSYTFKNGERIGIVGPNGSGKSTLLDIIVGRTKPDSGDVSLGMNTSFGYFDQVSKELSGDMRVIEYIK KECGVSIKMSDDRVLSAADMLELFLFDTRLQAGYIKNLSGGEKRRLYLVSILMTDPNFLILDEPTNDLDIRTLSVLEEFL TEFGGCVLVVSHDRYFMDRTVDYLFIFQGEGIVEKFPGNYSEYLEYKNYLNKQKEKKEIEIKPKEIDSSKTKKGLSFNQK KELDVLETEIFSLEEEERKLTEVLQSGIGKPNELATVGNRLMEIHAVLPSKLERWEELQNLL
Sequences:
>Translated_622_residues MNLISVDKISKEIGSKVLFNQISFGINEGERIGILGINGSGKTTLLKILAGLDIPDSGQVMKNKILRIAVLSQSPSFDPN HTVLEHIFSGSSSILETIRSYEAVCERLDSGGGAEEEYNRLMLEMDRLGAWELESWYRSLLKELNIRDLSIRMGSLSGGM LKKVALVQILIEESNLLVLDEPTNHLDVDTILWLQDYLIETKKAVLLVTHDRYFLEEVTERILELENGSLFSFPGNFGFY LEKKNEAEVIREKAEQKEKQFLKKELEWLRRQPKARGTKQKGRTDRALEVLNRKKAGKEIVLDFSVSGKRLGKKILELKN LHKSYHKSIISNFSYTFKNGERIGIVGPNGSGKSTLLDIIVGRTKPDSGDVSLGMNTSFGYFDQVSKELSGDMRVIEYIK KECGVSIKMSDDRVLSAADMLELFLFDTRLQAGYIKNLSGGEKRRLYLVSILMTDPNFLILDEPTNDLDIRTLSVLEEFL TEFGGCVLVVSHDRYFMDRTVDYLFIFQGEGIVEKFPGNYSEYLEYKNYLNKQKEKKEIEIKPKEIDSSKTKKGLSFNQK KELDVLETEIFSLEEEERKLTEVLQSGIGKPNELATVGNRLMEIHAVLPSKLERWEELQNLL >Mature_622_residues MNLISVDKISKEIGSKVLFNQISFGINEGERIGILGINGSGKTTLLKILAGLDIPDSGQVMKNKILRIAVLSQSPSFDPN HTVLEHIFSGSSSILETIRSYEAVCERLDSGGGAEEEYNRLMLEMDRLGAWELESWYRSLLKELNIRDLSIRMGSLSGGM LKKVALVQILIEESNLLVLDEPTNHLDVDTILWLQDYLIETKKAVLLVTHDRYFLEEVTERILELENGSLFSFPGNFGFY LEKKNEAEVIREKAEQKEKQFLKKELEWLRRQPKARGTKQKGRTDRALEVLNRKKAGKEIVLDFSVSGKRLGKKILELKN LHKSYHKSIISNFSYTFKNGERIGIVGPNGSGKSTLLDIIVGRTKPDSGDVSLGMNTSFGYFDQVSKELSGDMRVIEYIK KECGVSIKMSDDRVLSAADMLELFLFDTRLQAGYIKNLSGGEKRRLYLVSILMTDPNFLILDEPTNDLDIRTLSVLEEFL TEFGGCVLVVSHDRYFMDRTVDYLFIFQGEGIVEKFPGNYSEYLEYKNYLNKQKEKKEIEIKPKEIDSSKTKKGLSFNQK KELDVLETEIFSLEEEERKLTEVLQSGIGKPNELATVGNRLMEIHAVLPSKLERWEELQNLL
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=533, Percent_Identity=27.3921200750469, Blast_Score=178, Evalue=1e-44, Organism=Homo sapiens, GI10947137, Length=530, Percent_Identity=27.9245283018868, Blast_Score=177, Evalue=2e-44, Organism=Homo sapiens, GI27881506, Length=530, Percent_Identity=27.9245283018868, Blast_Score=177, Evalue=3e-44, Organism=Homo sapiens, GI10947135, Length=544, Percent_Identity=29.7794117647059, Blast_Score=176, Evalue=6e-44, Organism=Homo sapiens, GI69354671, Length=544, Percent_Identity=29.7794117647059, Blast_Score=176, Evalue=6e-44, Organism=Homo sapiens, GI27477115, Length=196, Percent_Identity=29.0816326530612, Blast_Score=73, Evalue=7e-13, Organism=Homo sapiens, GI27262624, Length=185, Percent_Identity=29.1891891891892, Blast_Score=70, Evalue=5e-12, Organism=Homo sapiens, GI27262626, Length=185, Percent_Identity=29.1891891891892, Blast_Score=70, Evalue=5e-12, Organism=Homo sapiens, GI153792144, Length=183, Percent_Identity=28.4153005464481, Blast_Score=70, Evalue=6e-12, Organism=Homo sapiens, GI73747915, Length=203, Percent_Identity=27.0935960591133, Blast_Score=69, Evalue=1e-11, Organism=Homo sapiens, GI27881501, Length=236, Percent_Identity=26.271186440678, Blast_Score=66, Evalue=8e-11, Organism=Homo sapiens, GI30795238, Length=236, Percent_Identity=26.271186440678, Blast_Score=66, Evalue=8e-11, Organism=Escherichia coli, GI2367384, Length=520, Percent_Identity=36.7307692307692, Blast_Score=338, Evalue=9e-94, Organism=Escherichia coli, GI1787182, Length=640, Percent_Identity=31.875, Blast_Score=289, Evalue=4e-79, Organism=Escherichia coli, GI1789751, Length=584, Percent_Identity=30.3082191780822, Blast_Score=235, Evalue=6e-63, Organism=Escherichia coli, GI1787041, Length=532, Percent_Identity=31.5789473684211, Blast_Score=221, Evalue=1e-58, Organism=Escherichia coli, GI87081782, Length=556, Percent_Identity=25.8992805755396, Blast_Score=90, Evalue=4e-19, Organism=Escherichia coli, GI87081834, Length=213, Percent_Identity=29.5774647887324, Blast_Score=81, Evalue=2e-16, Organism=Escherichia coli, GI1788165, Length=223, Percent_Identity=26.457399103139, Blast_Score=81, Evalue=2e-16, Organism=Escherichia coli, GI1789593, Length=199, Percent_Identity=28.643216080402, Blast_Score=74, Evalue=3e-14, Organism=Escherichia coli, GI1789963, Length=261, Percent_Identity=25.6704980842912, Blast_Score=73, Evalue=6e-14, Organism=Escherichia coli, GI1787164, Length=184, Percent_Identity=29.8913043478261, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI87081709, Length=198, Percent_Identity=28.2828282828283, Blast_Score=71, Evalue=3e-13, Organism=Escherichia coli, GI1788761, Length=223, Percent_Identity=26.0089686098655, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI1786975, Length=201, Percent_Identity=29.3532338308458, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1787370, Length=259, Percent_Identity=24.7104247104247, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI1787029, Length=278, Percent_Identity=24.1007194244604, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI1788506, Length=250, Percent_Identity=25.2, Blast_Score=67, Evalue=5e-12, Organism=Escherichia coli, GI1787112, Length=217, Percent_Identity=30.8755760368664, Blast_Score=64, Evalue=3e-11, Organism=Escherichia coli, GI1787758, Length=222, Percent_Identity=25.2252252252252, Blast_Score=64, Evalue=3e-11, Organism=Escherichia coli, GI1789032, Length=246, Percent_Identity=25.609756097561, Blast_Score=62, Evalue=1e-10, Organism=Caenorhabditis elegans, GI17559834, Length=535, Percent_Identity=28.411214953271, Blast_Score=202, Evalue=4e-52, Organism=Caenorhabditis elegans, GI17555318, Length=528, Percent_Identity=25.1893939393939, Blast_Score=156, Evalue=3e-38, Organism=Caenorhabditis elegans, GI17553372, Length=555, Percent_Identity=27.2072072072072, Blast_Score=148, Evalue=9e-36, Organism=Caenorhabditis elegans, GI17565938, Length=299, Percent_Identity=24.7491638795987, Blast_Score=71, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6320874, Length=547, Percent_Identity=27.9707495429616, Blast_Score=180, Evalue=5e-46, Organism=Saccharomyces cerevisiae, GI6321121, Length=552, Percent_Identity=27.8985507246377, Blast_Score=151, Evalue=4e-37, Organism=Saccharomyces cerevisiae, GI6325030, Length=373, Percent_Identity=28.4182305630027, Blast_Score=125, Evalue=2e-29, Organism=Saccharomyces cerevisiae, GI6324314, Length=379, Percent_Identity=25.065963060686, Blast_Score=120, Evalue=5e-28, Organism=Saccharomyces cerevisiae, GI6323278, Length=378, Percent_Identity=26.4550264550265, Blast_Score=120, Evalue=8e-28, Organism=Saccharomyces cerevisiae, GI6324498, Length=208, Percent_Identity=28.8461538461538, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI24641342, Length=531, Percent_Identity=29.5668549905838, Blast_Score=202, Evalue=5e-52, Organism=Drosophila melanogaster, GI24666836, Length=539, Percent_Identity=27.8293135435993, Blast_Score=169, Evalue=4e-42, Organism=Drosophila melanogaster, GI24642252, Length=551, Percent_Identity=25.7713248638838, Blast_Score=159, Evalue=5e-39, Organism=Drosophila melanogaster, GI18859989, Length=551, Percent_Identity=25.7713248638838, Blast_Score=159, Evalue=5e-39, Organism=Drosophila melanogaster, GI281363262, Length=227, Percent_Identity=28.1938325991189, Blast_Score=69, Evalue=7e-12, Organism=Drosophila melanogaster, GI24653245, Length=227, Percent_Identity=28.1938325991189, Blast_Score=69, Evalue=1e-11, Organism=Drosophila melanogaster, GI24641565, Length=245, Percent_Identity=25.7142857142857, Blast_Score=69, Evalue=1e-11, Organism=Drosophila melanogaster, GI116007328, Length=214, Percent_Identity=28.0373831775701, Blast_Score=67, Evalue=4e-11, Organism=Drosophila melanogaster, GI28574150, Length=214, Percent_Identity=28.0373831775701, Blast_Score=67, Evalue=4e-11, Organism=Drosophila melanogaster, GI85816269, Length=161, Percent_Identity=32.2981366459627, Blast_Score=67, Evalue=4e-11, Organism=Drosophila melanogaster, GI24580553, Length=161, Percent_Identity=32.2981366459627, Blast_Score=67, Evalue=4e-11, Organism=Drosophila melanogaster, GI85724864, Length=161, Percent_Identity=32.2981366459627, Blast_Score=67, Evalue=5e-11, Organism=Drosophila melanogaster, GI24580555, Length=161, Percent_Identity=32.2981366459627, Blast_Score=67, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 70804; Mature: 70804
Theoretical pI: Translated: 5.70; Mature: 5.70
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLISVDKISKEIGSKVLFNQISFGINEGERIGILGINGSGKTTLLKILAGLDIPDSGQV CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCHH MKNKILRIAVLSQSPSFDPNHTVLEHIFSGSSSILETIRSYEAVCERLDSGGGAEEEYNR HHHCEEEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH LMLEMDRLGAWELESWYRSLLKELNIRDLSIRMGSLSGGMLKKVALVQILIEESNLLVLD HHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHEECCCEEEEE EPTNHLDVDTILWLQDYLIETKKAVLLVTHDRYFLEEVTERILELENGSLFSFPGNFGFY CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEECCCCCEEE LEKKNEAEVIREKAEQKEKQFLKKELEWLRRQPKARGTKQKGRTDRALEVLNRKKAGKEI EECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEE VLDFSVSGKRLGKKILELKNLHKSYHKSIISNFSYTFKNGERIGIVGPNGSGKSTLLDII EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEECCCCCCHHHHHHHH VGRTKPDSGDVSLGMNTSFGYFDQVSKELSGDMRVIEYIKKECGVSIKMSDDRVLSAADM CCCCCCCCCCEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCEEEEECCCCHHHHHHH LELFLFDTRLQAGYIKNLSGGEKRRLYLVSILMTDPNFLILDEPTNDLDIRTLSVLEEFL HHHHHHHHHHHCCHHCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHH TEFGGCVLVVSHDRYFMDRTVDYLFIFQGEGIVEKFPGNYSEYLEYKNYLNKQKEKKEIE HHHCCEEEEEECCCHHHHCCEEEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCC IKPKEIDSSKTKKGLSFNQKKELDVLETEIFSLEEEERKLTEVLQSGIGKPNELATVGNR CCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHH LMEIHAVLPSKLERWEELQNLL HHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNLISVDKISKEIGSKVLFNQISFGINEGERIGILGINGSGKTTLLKILAGLDIPDSGQV CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCHH MKNKILRIAVLSQSPSFDPNHTVLEHIFSGSSSILETIRSYEAVCERLDSGGGAEEEYNR HHHCEEEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH LMLEMDRLGAWELESWYRSLLKELNIRDLSIRMGSLSGGMLKKVALVQILIEESNLLVLD HHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHEECCCEEEEE EPTNHLDVDTILWLQDYLIETKKAVLLVTHDRYFLEEVTERILELENGSLFSFPGNFGFY CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEECCCCCEEE LEKKNEAEVIREKAEQKEKQFLKKELEWLRRQPKARGTKQKGRTDRALEVLNRKKAGKEI EECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEE VLDFSVSGKRLGKKILELKNLHKSYHKSIISNFSYTFKNGERIGIVGPNGSGKSTLLDII EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEECCCCCCHHHHHHHH VGRTKPDSGDVSLGMNTSFGYFDQVSKELSGDMRVIEYIKKECGVSIKMSDDRVLSAADM CCCCCCCCCCEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCEEEEECCCCHHHHHHH LELFLFDTRLQAGYIKNLSGGEKRRLYLVSILMTDPNFLILDEPTNDLDIRTLSVLEEFL HHHHHHHHHHHCCHHCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHH TEFGGCVLVVSHDRYFMDRTVDYLFIFQGEGIVEKFPGNYSEYLEYKNYLNKQKEKKEIE HHHCCEEEEEECCCHHHHCCEEEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCC IKPKEIDSSKTKKGLSFNQKKELDVLETEIFSLEEEERKLTEVLQSGIGKPNELATVGNR CCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHH LMEIHAVLPSKLERWEELQNLL HHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9141694; 9384377 [H]