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The map label for this gene is rbpE [H]

Identifier: 116328543

GI number: 116328543

Start: 2212050

End: 2212415

Strand: Direct

Name: rbpE [H]

Synonym: LBL_1897

Alternate gene names: 116328543

Gene position: 2212050-2212415 (Clockwise)

Preceding gene: 116328542

Following gene: 116328544

Centisome position: 61.2

GC content: 41.26

Gene sequence:

>366_bases
ATGAAGATATCAGTAGGAAATCTACCTCAGGAGTTGACCGAAGACGAGCTGAAAAAGATTTTTTCGGAATTCGGAACCGT
TCAAGAAGTACATATTAAAAAAGATAAAACTACGGGACGTTCTTTGTCTTATGGATCTGTCGAAATGGACGATTCTGCGG
GAACGCAAGCAATTGCGGCATTGAATAAAAAAGAAATCCAAGGCAAACAGATCGCGGTAATCGATTCTGAGGAATTAAAA
AGAGAGTTCGAAAAAAAACAATCCGTAAAAGGCGGAGGGGCTTCCGGTAAGATTCATGGAAATCAGTCGAAGTTTGGAGG
ATTTTCAGGCGCTGGTGTAAGAAGAACCGGAGGAAGAGGAAAATGA

Upstream 100 bases:

>100_bases
TTATTAGGTCGGAATGGAACTCGTTTTGTTCCGATCTTGATGGAATTTGGTTTTCAATAAAATCGGATTTTACAAACTGA
TTCTTGAGAAAGGAAAAATC

Downstream 100 bases:

>100_bases
AATTGACACGTTTATTCATCTTAGCGATTTTTTGTGTCGCGATAGTTCCCACATTTGCAGAAGACTTAGTTATCAAAGAT
ATTCGTATCGGAACCGGTAA

Product: RNA binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 121

Protein sequence:

>121_residues
MKISVGNLPQELTEDELKKIFSEFGTVQEVHIKKDKTTGRSLSYGSVEMDDSAGTQAIAALNKKEIQGKQIAVIDSEELK
REFEKKQSVKGGGASGKIHGNQSKFGGFSGAGVRRTGGRGK

Sequences:

>Translated_121_residues
MKISVGNLPQELTEDELKKIFSEFGTVQEVHIKKDKTTGRSLSYGSVEMDDSAGTQAIAALNKKEIQGKQIAVIDSEELK
REFEKKQSVKGGGASGKIHGNQSKFGGFSGAGVRRTGGRGK
>Mature_121_residues
MKISVGNLPQELTEDELKKIFSEFGTVQEVHIKKDKTTGRSLSYGSVEMDDSAGTQAIAALNKKEIQGKQIAVIDSEELK
REFEKKQSVKGGGASGKIHGNQSKFGGFSGAGVRRTGGRGK

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 12985; Mature: 12985

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKISVGNLPQELTEDELKKIFSEFGTVQEVHIKKDKTTGRSLSYGSVEMDDSAGTQAIAA
CCCCCCCCCHHCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCEEECCCCCHHHHHH
LNKKEIQGKQIAVIDSEELKREFEKKQSVKGGGASGKIHGNQSKFGGFSGAGVRRTGGRG
HHHHHCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCC
K
C
>Mature Secondary Structure
MKISVGNLPQELTEDELKKIFSEFGTVQEVHIKKDKTTGRSLSYGSVEMDDSAGTQAIAA
CCCCCCCCCHHCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCEEECCCCCHHHHHH
LNKKEIQGKQIAVIDSEELKREFEKKQSVKGGGASGKIHGNQSKFGGFSGAGVRRTGGRG
HHHHHCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]