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The map label for this gene is yebA [H]

Identifier: 116328311

GI number: 116328311

Start: 1930484

End: 1931407

Strand: Reverse

Name: yebA [H]

Synonym: LBL_1647

Alternate gene names: 116328311

Gene position: 1931407-1930484 (Counterclockwise)

Preceding gene: 116328312

Following gene: 116328310

Centisome position: 53.44

GC content: 40.37

Gene sequence:

>924_bases
GTGAATGGAAAACTTTTTTTTATTCCTCTCATTTCTTCTTTGATTCTCAGCCCTATTTTTGCGGATCCTTTGAAGAATTA
TGATGCTGAGATTTCGGAATATACCAATAAGGATTCTTCCTTCTTTTCCGATAAGGAAGAGCGTAAAATTAAACAATTAT
TTTCCCAATCCCCTGAAAATTGGCAGGAGGAAAAATATTCCCTCAATTACCATAAGGATAAGTCCAATTTAGAACTTCCG
AGTTTTATCAATGTCAGTAAAATCATTTCTTCCAGAATCGTAAGCCATAGTGGGATCATCTATAAAAATTATGTTGTAAA
ACCGAAAGACTCTCTCTCCAAGATCGCAAGAGATATGAAAACTTCGGTTCAAAAAATTATCTCTATAAACGGTCTGAAAA
AGAACACTACGCTTCAAGTCGGACAGAATATTTCCATTCCGATTCAAGTGCGTAACGCAAGCCGCGAAAGAGTGGAATTT
CGTAGATTATTTGTACATCCGGTCTTGAACGCAAAAATAACTTCTCGTTATGGAAGAAGAAAGGATCCGTTTCATACCGG
TTCCCGCGGCTTTCATACCGGTTTGGATTTTGCAGGCACACAAGGCGCTCCGATTCTTGCAGTTGCAGACGGAGTTGTAT
CTTTTGCCGGGGTAAACGGAGGTTATGGGAATACGGTTATCATCGATCACGAGAACGGTTATAAAACAATGTATGCCCAT
TGTTCGAAAATTACGATCGATCAGGGAACGAAAGTCAGCACTGGCACGGTCATAGGTGCAATTGGCAGAACCGGGTCGGC
TACGGGACCTCACCTTCATTTTGAGGTCTTTTTAAACGGAACTAGGGTAAATCCTGAGACCGCTTTGAAAAAGGCATTGA
AGATTGTTACTCCTTTAGATCCGGGTAGATTTGCCAGATTGTAA

Upstream 100 bases:

>100_bases
AAGTTGATGGCCAATGAACTTGTGGAATATAAAAAGAAAAAATAAATCCTCTACAGGAGCGGGATCAAGATCGGCTAGAT
CCGTATCCGATATTAAAAAA

Downstream 100 bases:

>100_bases
TCCAAATAGAAATTGGAAGTATCCTAATTTCTTGAAAGAAATTTACTAATCGAATTCCTATGAACGCGATTTTTTTAGAA
CTCAGGAAGAACACTTTCTA

Product: metallopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MNGKLFFIPLISSLILSPIFADPLKNYDAEISEYTNKDSSFFSDKEERKIKQLFSQSPENWQEEKYSLNYHKDKSNLELP
SFINVSKIISSRIVSHSGIIYKNYVVKPKDSLSKIARDMKTSVQKIISINGLKKNTTLQVGQNISIPIQVRNASRERVEF
RRLFVHPVLNAKITSRYGRRKDPFHTGSRGFHTGLDFAGTQGAPILAVADGVVSFAGVNGGYGNTVIIDHENGYKTMYAH
CSKITIDQGTKVSTGTVIGAIGRTGSATGPHLHFEVFLNGTRVNPETALKKALKIVTPLDPGRFARL

Sequences:

>Translated_307_residues
MNGKLFFIPLISSLILSPIFADPLKNYDAEISEYTNKDSSFFSDKEERKIKQLFSQSPENWQEEKYSLNYHKDKSNLELP
SFINVSKIISSRIVSHSGIIYKNYVVKPKDSLSKIARDMKTSVQKIISINGLKKNTTLQVGQNISIPIQVRNASRERVEF
RRLFVHPVLNAKITSRYGRRKDPFHTGSRGFHTGLDFAGTQGAPILAVADGVVSFAGVNGGYGNTVIIDHENGYKTMYAH
CSKITIDQGTKVSTGTVIGAIGRTGSATGPHLHFEVFLNGTRVNPETALKKALKIVTPLDPGRFARL
>Mature_307_residues
MNGKLFFIPLISSLILSPIFADPLKNYDAEISEYTNKDSSFFSDKEERKIKQLFSQSPENWQEEKYSLNYHKDKSNLELP
SFINVSKIISSRIVSHSGIIYKNYVVKPKDSLSKIARDMKTSVQKIISINGLKKNTTLQVGQNISIPIQVRNASRERVEF
RRLFVHPVLNAKITSRYGRRKDPFHTGSRGFHTGLDFAGTQGAPILAVADGVVSFAGVNGGYGNTVIIDHENGYKTMYAH
CSKITIDQGTKVSTGTVIGAIGRTGSATGPHLHFEVFLNGTRVNPETALKKALKIVTPLDPGRFARL

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=118, Percent_Identity=45.7627118644068, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI87082174, Length=213, Percent_Identity=28.169014084507, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1789099, Length=99, Percent_Identity=40.4040404040404, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 34088; Mature: 34088

Theoretical pI: Translated: 10.39; Mature: 10.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGKLFFIPLISSLILSPIFADPLKNYDAEISEYTNKDSSFFSDKEERKIKQLFSQSPEN
CCCCEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHCCCHHHHHHHHHHHCCCCC
WQEEKYSLNYHKDKSNLELPSFINVSKIISSRIVSHSGIIYKNYVVKPKDSLSKIARDMK
HHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHH
TSVQKIISINGLKKNTTLQVGQNISIPIQVRNASRERVEFRRLFVHPVLNAKITSRYGRR
HHHHHHHHHCCCCCCCEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHCCHHHHHCCCC
KDPFHTGSRGFHTGLDFAGTQGAPILAVADGVVSFAGVNGGYGNTVIIDHENGYKTMYAH
CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHEECCCCCCCCEEEEECCCCCEEHEEC
CSKITIDQGTKVSTGTVIGAIGRTGSATGPHLHFEVFLNGTRVNPETALKKALKIVTPLD
CCEEEECCCCEEECCEEEEECCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCC
PGRFARL
CCCCCCC
>Mature Secondary Structure
MNGKLFFIPLISSLILSPIFADPLKNYDAEISEYTNKDSSFFSDKEERKIKQLFSQSPEN
CCCCEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHCCCHHHHHHHHHHHCCCCC
WQEEKYSLNYHKDKSNLELPSFINVSKIISSRIVSHSGIIYKNYVVKPKDSLSKIARDMK
HHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHH
TSVQKIISINGLKKNTTLQVGQNISIPIQVRNASRERVEFRRLFVHPVLNAKITSRYGRR
HHHHHHHHHCCCCCCCEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHCCHHHHHCCCC
KDPFHTGSRGFHTGLDFAGTQGAPILAVADGVVSFAGVNGGYGNTVIIDHENGYKTMYAH
CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHEECCCCCCCCEEEEECCCCCEEHEEC
CSKITIDQGTKVSTGTVIGAIGRTGSATGPHLHFEVFLNGTRVNPETALKKALKIVTPLD
CCEEEECCCCEEECCEEEEECCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCC
PGRFARL
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]