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The map label for this gene is ubiD [C]

Identifier: 116328198

GI number: 116328198

Start: 1779404

End: 1781161

Strand: Direct

Name: ubiD [C]

Synonym: LBL_1522

Alternate gene names: 116328198

Gene position: 1779404-1781161 (Clockwise)

Preceding gene: 116328197

Following gene: 116328199

Centisome position: 49.23

GC content: 43.29

Gene sequence:

>1758_bases
ATGAAACTTCGATCCACAGCGGAATTCGTAAAGGAATTACAAAAGCAAAAGGAACTTCTCGTCATAGAAGAGGAAGTAAA
TCCAGTATTAGAATTAGCTGAAATTCAAAGAAGGGTCGTTTCTAAAAGAGGACCGGCAATTCTTTTTAAAAACGTAAAAG
GCTCCCGCTTTAGCGTCGCAACTAACCTCTACGGTTCCGAAAAAAGAATGAAGATTGCGTTCGGAGAGGACCCGATCAAG
TTCGTACAAAAAATCGCACATACGATCCAGCATATTATTCCCCCGACTCCGACTAAAATTTGGGCTTTGAGAAATCTTGC
CTTTCAAGCATTGAGAGTCGGGCTCAAAAAAGTGAACTTGGCTCCGATTCTTGAAAACACATTAGATTCTTTGCATGAAC
TTCCTACAATCAAGTCCTGGCCGAAAGATGGAGGAAATTTCGTTACTCTTCCTTTGGTTTATACGGAAAGTCCCAAAACC
GGAAAGGGAAATCTAGGAATGTACCGAATCCAGATTCACGGACCGATGGAAACCGGGATGCACATCCAAATTCACAGAGG
CGGTGGAAATCATTACTACGAGGCGGAAAAGGAAGGTTTGCCTCTTCCAGTACATATTTATACGGGAGGTCCTCCTGGTT
TGACAATCGCCGCCGTCGCTCCTTTACCCGAGGAAATCAGCGAACTGATTCTCGCTTCGCTTTTGTTAGGCGAAAAGCTT
AAAATTAAGAGAGACAAGAATGTTTCTTCTCTTCCGATCGTAGCGGATGCGGATTTTTTAATTCAAGGTACGATCCCTCC
CAAGATTCGAAAGCCGGAAGGGCCGTTTGGGGATCACTACGGGTATTACGCGTTAAAACACGATTATCCGGTCGTCCAGG
TTCAAAAAATCTATCATCGAAAGGATGCGATTTGGCCTGCGACTGTGGTGGGCCGTCCTCCTCAGGAAGATCATTGGATT
GCGGAGTATCTCCAGGATCTTTTATCTCCTCTATTTCCCGTGGTAATGCCCGCGGTAAGGGGAATTTGGGCTTACGAAGA
ATCCGGGGTGCATTCTCTTGCGGCTGCTATAGTTAAGGAAAGATACCAAGGAGAAGCGTTCACCGGCGCACTTCGAATTT
TAGGAGAAGGGCAACTTTCCCTTACAAAGGTACTACTTGTAACGGATCAGAATGTGAATCTGAAAAATTTCAGAGAAACG
TTTATTAGTGTATTAGAAAGAATGAATCCGATTACGGATATTCATATTTTCGCAAACATCTCCCAGGATACGCTCGATTA
TACGGGACCTGCCGTAAATCAAGGAAGTAAGGCGATCCTCTTAGGTTCCGGAAAAAAGAAAAACGATTTAAAAGAACAAT
TCAAAGGAAAGTTCCTGTATTCTTCTTTTAAAAATCCGAAGGTTCCCTATCCGGGAATTTTGGTAATATCCGGACCCAAA
TACAAACCAAAAGACGGAATCCCTTCTAAACTTTTGAAAGAGAAGTCGATCCGAGATTTTCTATTTGTATTCCTTGTGGA
CGACTCGGAAGACGCGACCCGTTCCGATCACGATTTTATCTGGTCGATCTTTACCCGCTTTGAACCTGCCGGAGATATTT
ATGCGGATACGAAATTAATCCGAAATCATCCTGCATTCTACCCGCCGATCGTGATCGATTGTAGAATGAAAACTTGGTAT
CCTCCTTTGACCGAAGCGGATACAAAGACGATTCGAAAAGTAGATGATAGATTTAGTAGACTGATAGACTCTCTTTAA

Upstream 100 bases:

>100_bases
AATCGGATCTCAAGGAAGAATTCCCATCTTCTATATCCGGAAAATTGATCAGGCTTAGAAATAAAAACAAAAAACAACCG
GAGCTTCCGGTGGAAAATTT

Downstream 100 bases:

>100_bases
GAAATTTGAATCCTATGATGAAAAAAAGATGTATCGTTACTGGCGGAGCCGGGCTCATAGGCTCCAATCTGATTCAGGAA
CTCAATCGACGAGGGATTGA

Product: 3-polyprenyl-4-hydroxybenzoate decarboxylase

Products: NA

Alternate protein names: 4-hydroxybenzoate DC; HBDC [H]

Number of amino acids: Translated: 585; Mature: 585

Protein sequence:

>585_residues
MKLRSTAEFVKELQKQKELLVIEEEVNPVLELAEIQRRVVSKRGPAILFKNVKGSRFSVATNLYGSEKRMKIAFGEDPIK
FVQKIAHTIQHIIPPTPTKIWALRNLAFQALRVGLKKVNLAPILENTLDSLHELPTIKSWPKDGGNFVTLPLVYTESPKT
GKGNLGMYRIQIHGPMETGMHIQIHRGGGNHYYEAEKEGLPLPVHIYTGGPPGLTIAAVAPLPEEISELILASLLLGEKL
KIKRDKNVSSLPIVADADFLIQGTIPPKIRKPEGPFGDHYGYYALKHDYPVVQVQKIYHRKDAIWPATVVGRPPQEDHWI
AEYLQDLLSPLFPVVMPAVRGIWAYEESGVHSLAAAIVKERYQGEAFTGALRILGEGQLSLTKVLLVTDQNVNLKNFRET
FISVLERMNPITDIHIFANISQDTLDYTGPAVNQGSKAILLGSGKKKNDLKEQFKGKFLYSSFKNPKVPYPGILVISGPK
YKPKDGIPSKLLKEKSIRDFLFVFLVDDSEDATRSDHDFIWSIFTRFEPAGDIYADTKLIRNHPAFYPPIVIDCRMKTWY
PPLTEADTKTIRKVDDRFSRLIDSL

Sequences:

>Translated_585_residues
MKLRSTAEFVKELQKQKELLVIEEEVNPVLELAEIQRRVVSKRGPAILFKNVKGSRFSVATNLYGSEKRMKIAFGEDPIK
FVQKIAHTIQHIIPPTPTKIWALRNLAFQALRVGLKKVNLAPILENTLDSLHELPTIKSWPKDGGNFVTLPLVYTESPKT
GKGNLGMYRIQIHGPMETGMHIQIHRGGGNHYYEAEKEGLPLPVHIYTGGPPGLTIAAVAPLPEEISELILASLLLGEKL
KIKRDKNVSSLPIVADADFLIQGTIPPKIRKPEGPFGDHYGYYALKHDYPVVQVQKIYHRKDAIWPATVVGRPPQEDHWI
AEYLQDLLSPLFPVVMPAVRGIWAYEESGVHSLAAAIVKERYQGEAFTGALRILGEGQLSLTKVLLVTDQNVNLKNFRET
FISVLERMNPITDIHIFANISQDTLDYTGPAVNQGSKAILLGSGKKKNDLKEQFKGKFLYSSFKNPKVPYPGILVISGPK
YKPKDGIPSKLLKEKSIRDFLFVFLVDDSEDATRSDHDFIWSIFTRFEPAGDIYADTKLIRNHPAFYPPIVIDCRMKTWY
PPLTEADTKTIRKVDDRFSRLIDSL
>Mature_585_residues
MKLRSTAEFVKELQKQKELLVIEEEVNPVLELAEIQRRVVSKRGPAILFKNVKGSRFSVATNLYGSEKRMKIAFGEDPIK
FVQKIAHTIQHIIPPTPTKIWALRNLAFQALRVGLKKVNLAPILENTLDSLHELPTIKSWPKDGGNFVTLPLVYTESPKT
GKGNLGMYRIQIHGPMETGMHIQIHRGGGNHYYEAEKEGLPLPVHIYTGGPPGLTIAAVAPLPEEISELILASLLLGEKL
KIKRDKNVSSLPIVADADFLIQGTIPPKIRKPEGPFGDHYGYYALKHDYPVVQVQKIYHRKDAIWPATVVGRPPQEDHWI
AEYLQDLLSPLFPVVMPAVRGIWAYEESGVHSLAAAIVKERYQGEAFTGALRILGEGQLSLTKVLLVTDQNVNLKNFRET
FISVLERMNPITDIHIFANISQDTLDYTGPAVNQGSKAILLGSGKKKNDLKEQFKGKFLYSSFKNPKVPYPGILVISGPK
YKPKDGIPSKLLKEKSIRDFLFVFLVDDSEDATRSDHDFIWSIFTRFEPAGDIYADTKLIRNHPAFYPPIVIDCRMKTWY
PPLTEADTKTIRKVDDRFSRLIDSL

Specific function: Catalyzes the reversible decarboxylation of 4- hydroxybenzoate [H]

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=469, Percent_Identity=30.4904051172708, Blast_Score=222, Evalue=6e-59,
Organism=Saccharomyces cerevisiae, GI6320748, Length=503, Percent_Identity=24.2544731610338, Blast_Score=95, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR022390
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: =4.1.1.61 [H]

Molecular weight: Translated: 65864; Mature: 65864

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLRSTAEFVKELQKQKELLVIEEEVNPVLELAEIQRRVVSKRGPAILFKNVKGSRFSVA
CCCCHHHHHHHHHHHCCCEEEEHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEE
TNLYGSEKRMKIAFGEDPIKFVQKIAHTIQHIIPPTPTKIWALRNLAFQALRVGLKKVNL
ECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC
APILENTLDSLHELPTIKSWPKDGGNFVTLPLVYTESPKTGKGNLGMYRIQIHGPMETGM
HHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCC
HIQIHRGGGNHYYEAEKEGLPLPVHIYTGGPPGLTIAAVAPLPEEISELILASLLLGEKL
EEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHCCCE
KIKRDKNVSSLPIVADADFLIQGTIPPKIRKPEGPFGDHYGYYALKHDYPVVQVQKIYHR
EEECCCCCCCCCEEECCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHH
KDAIWPATVVGRPPQEDHWIAEYLQDLLSPLFPVVMPAVRGIWAYEESGVHSLAAAIVKE
HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
RYQGEAFTGALRILGEGQLSLTKVLLVTDQNVNLKNFRETFISVLERMNPITDIHIFANI
HHCCCHHEEHHHEECCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEC
SQDTLDYTGPAVNQGSKAILLGSGKKKNDLKEQFKGKFLYSSFKNPKVPYPGILVISGPK
CCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCEEECCCCCCCCCCCCEEEEECCC
YKPKDGIPSKLLKEKSIRDFLFVFLVDDSEDATRSDHDFIWSIFTRFEPAGDIYADTKLI
CCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHH
RNHPAFYPPIVIDCRMKTWYPPLTEADTKTIRKVDDRFSRLIDSL
HCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKLRSTAEFVKELQKQKELLVIEEEVNPVLELAEIQRRVVSKRGPAILFKNVKGSRFSVA
CCCCHHHHHHHHHHHCCCEEEEHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEE
TNLYGSEKRMKIAFGEDPIKFVQKIAHTIQHIIPPTPTKIWALRNLAFQALRVGLKKVNL
ECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC
APILENTLDSLHELPTIKSWPKDGGNFVTLPLVYTESPKTGKGNLGMYRIQIHGPMETGM
HHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCC
HIQIHRGGGNHYYEAEKEGLPLPVHIYTGGPPGLTIAAVAPLPEEISELILASLLLGEKL
EEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHCCCE
KIKRDKNVSSLPIVADADFLIQGTIPPKIRKPEGPFGDHYGYYALKHDYPVVQVQKIYHR
EEECCCCCCCCCEEECCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHH
KDAIWPATVVGRPPQEDHWIAEYLQDLLSPLFPVVMPAVRGIWAYEESGVHSLAAAIVKE
HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
RYQGEAFTGALRILGEGQLSLTKVLLVTDQNVNLKNFRETFISVLERMNPITDIHIFANI
HHCCCHHEEHHHEECCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEC
SQDTLDYTGPAVNQGSKAILLGSGKKKNDLKEQFKGKFLYSSFKNPKVPYPGILVISGPK
CCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCEEECCCCCCCCCCCCEEEEECCC
YKPKDGIPSKLLKEKSIRDFLFVFLVDDSEDATRSDHDFIWSIFTRFEPAGDIYADTKLI
CCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHH
RNHPAFYPPIVIDCRMKTWYPPLTEADTKTIRKVDDRFSRLIDSL
HCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362 [H]